Variant report

Variant	rs3825614
Chromosome Location	chr14:55729387-55729388
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55708908..55710762-chr14:55729314..55730925,2	K562	blood:
2	chr14:55727647..55729391-chr14:55818839..55821445,2	MCF-7	breast:
3	chr14:55728321..55735089-chr14:55735819..55739586,10	K562	blood:
4	chr14:55727113..55735518-chr14:55736186..55741884,14	K562	blood:
5	chr14:55728719..55731399-chr14:55736825..55739214,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178974	Chromatin interaction
ENSG00000258413	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10129505	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs10131562	0.92[CEU][hapmap]
rs10131730	0.96[CEU][hapmap]
rs10134317	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs10139683	0.96[EUR][1000 genomes]
rs10140063	0.95[EUR][1000 genomes]
rs10140857	0.94[CHB][hapmap];0.81[JPT][hapmap]
rs10141396	0.96[CEU][hapmap]
rs10142803	0.96[EUR][1000 genomes]
rs10143136	0.96[EUR][1000 genomes]
rs10146637	0.96[CEU][hapmap];0.96[EUR][1000 genomes]
rs11158034	0.96[CEU][hapmap];0.96[EUR][1000 genomes]
rs11621089	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11622636	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[YRI][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11622740	0.87[CHB][hapmap];0.83[JPT][hapmap]
rs11848456	0.96[EUR][1000 genomes]
rs11848575	0.96[EUR][1000 genomes]
rs11851870	0.81[JPT][hapmap]
rs17253695	0.92[CEU][hapmap]
rs17672058	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17672364	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17740551	0.95[EUR][1000 genomes]
rs17742719	0.81[JPT][hapmap]
rs1972221	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs2026633	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs2075603	0.94[CHB][hapmap];0.83[JPT][hapmap]
rs2094436	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2147970	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2274273	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs2296489	0.92[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.90[YRI][hapmap];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2340936	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2880103	0.92[CEU][hapmap];0.95[EUR][1000 genomes]
rs35112084	0.93[EUR][1000 genomes]
rs3759667	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[YRI][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3783651	0.96[CEU][hapmap]
rs3825613	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs4040064	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4525413	0.83[EUR][1000 genomes]
rs4580079	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs4644	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs56166765	0.94[EUR][1000 genomes]
rs57033289	0.80[EUR][1000 genomes]
rs57571649	0.87[AFR][1000 genomes]
rs58269011	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58458194	0.96[EUR][1000 genomes]
rs66464079	0.95[EUR][1000 genomes]
rs66476033	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66551709	0.91[EUR][1000 genomes]
rs66842809	0.82[EUR][1000 genomes]
rs67008693	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67092614	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67215571	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67386901	0.96[EUR][1000 genomes]
rs67416413	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67588230	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67795323	0.91[EUR][1000 genomes]
rs67822108	0.90[EUR][1000 genomes]
rs67958555	0.96[AFR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs68138420	0.93[EUR][1000 genomes]
rs7140628	0.96[EUR][1000 genomes]
rs7147247	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs7150763	0.96[CEU][hapmap]
rs7151581	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs7151754	0.93[EUR][1000 genomes]
rs7152390	0.96[CEU][hapmap]
rs7154796	0.92[EUR][1000 genomes]
rs7155954	0.87[CEU][hapmap];0.96[EUR][1000 genomes]
rs7157308	0.94[EUR][1000 genomes]
rs7158791	0.92[CEU][hapmap]
rs7159824	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs72715709	0.87[AFR][1000 genomes]
rs73263927	0.93[EUR][1000 genomes]
rs8003279	0.86[CEU][hapmap];0.81[JPT][hapmap]
rs8005117	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8005450	0.92[CEU][hapmap]
rs8014477	0.96[CEU][hapmap]
rs8014540	0.96[CEU][hapmap]
rs8015211	0.96[CEU][hapmap]
rs9323285	0.92[CEU][hapmap]
rs9919932	0.92[CEU][hapmap]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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