Variant report

Variant	rs3825641
Chromosome Location	chr14:65562450-65562451
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65560947..65564608-chr14:65566060..65569242,4	K562	blood:
2	chr14:65555858..65557648-chr14:65560115..65562655,3	K562	blood:
3	chr14:65558796..65564739-chr14:65566972..65570414,12	MCF-7	breast:
4	chr14:65560947..65564339-chr14:65566060..65569042,5	K562	blood:

Variant related genes	Relation type
ENSG00000125952	Chromatin interaction
ENSG00000259118	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11845448	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2296314	0.85[ASN][1000 genomes]
rs2296320	0.85[ASN][1000 genomes]
rs34601568	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3783716	0.95[ASN][1000 genomes]
rs3783717	0.95[ASN][1000 genomes]
rs3783718	0.95[ASN][1000 genomes]
rs3783719	0.95[ASN][1000 genomes]
rs56325087	0.95[ASN][1000 genomes]
rs7142375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7155468	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72728236	0.95[ASN][1000 genomes]
rs73270852	0.90[AMR][1000 genomes]
rs73270859	0.90[AMR][1000 genomes]
rs73272630	1.00[ASN][1000 genomes]
rs9944027	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65539600-65563200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr14:65545400-65563000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:65548800-65563200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr14:65548800-65564800	Strong transcription	HUVEC	blood vessel
5	chr14:65552600-65562800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr14:65552600-65563200	Strong transcription	NHEK	skin
7	chr14:65553400-65565200	Strong transcription	Hela-S3	cervix
8	chr14:65553600-65562800	Strong transcription	NH-A	brain
9	chr14:65554400-65563400	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr14:65555000-65565400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr14:65555400-65562600	Strong transcription	Primary B cells from peripheral blood	blood
12	chr14:65555400-65562600	Strong transcription	HSMM	muscle
13	chr14:65555400-65563200	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr14:65555800-65565200	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr14:65556000-65562800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr14:65556200-65562600	Strong transcription	Thymus	Thymus
17	chr14:65556200-65562600	Strong transcription	Dnd41	blood
18	chr14:65556400-65567200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr14:65556400-65567600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr14:65556400-65569000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr14:65556800-65563200	Strong transcription	GM12878-XiMat	blood
22	chr14:65556800-65567800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr14:65557000-65564400	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr14:65557000-65565400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr14:65557200-65566800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr14:65557600-65568000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr14:65558200-65562800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
28	chr14:65558200-65563400	Strong transcription	Primary B cells from cord blood	blood
29	chr14:65558800-65564000	Genic enhancers	Fetal Intestine Small	intestine
30	chr14:65558800-65565200	Enhancers	Stomach Mucosa	stomach
31	chr14:65559000-65562600	Weak transcription	Fetal Brain Male	brain
32	chr14:65560400-65563800	Genic enhancers	Primary T cells fromperipheralblood	blood
33	chr14:65560400-65563800	Enhancers	Psoas Muscle	Psoas
34	chr14:65560400-65564800	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr14:65560400-65565000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
36	chr14:65560600-65563200	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr14:65560600-65563600	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr14:65560600-65564200	Enhancers	Right Ventricle	heart
39	chr14:65560600-65567800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr14:65560600-65568000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr14:65560800-65562600	Weak transcription	Pancreas	Pancrea
42	chr14:65560800-65564200	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr14:65560800-65565000	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
44	chr14:65560800-65568400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr14:65561000-65562800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr14:65561000-65563800	Enhancers	Right Atrium	heart
47	chr14:65561000-65564800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr14:65561000-65567400	Weak transcription	A549	lung
49	chr14:65561000-65567800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr14:65561200-65563600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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