Variant report

Variant	rs3826713
Chromosome Location	chr19:41892269-41892270
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:41889940..41893825-chr19:41898785..41901316,3	K562	blood:
2	chr19:41886073..41888188-chr19:41891478..41893284,2	K562	blood:
3	chr19:41889589..41893401-chr19:41943808..41947037,3	MCF-7	breast:
4	chr19:41882074..41885616-chr19:41888544..41893640,5	K562	blood:
5	chr19:41892238..41893967-chr19:41895860..41898284,2	K562	blood:

Variant related genes	Relation type
ENSG00000105341	Chromatin interaction
ENSG00000142046	Chromatin interaction
ENSG00000255730	Chromatin interaction
ENSG00000248098	Chromatin interaction

Extended variants
information (count: 98 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10409485	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10413735	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10416743	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10417311	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10417997	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10420556	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10422783	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10422956	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10432268	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1043413	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1077856	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10853751	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11083618	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11083619	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11667848	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11667908	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11668924	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11670583	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11670668	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11670725	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11670757	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11880539	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11883104	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12602	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12709849	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12980966	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13344547	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13344563	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13345590	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13346603	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1473248	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs166925	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16975238	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17318596	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17318666	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1967333	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1967334	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2231940	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2241706	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2241707	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2241708	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2241709	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2241710	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2241711	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2288871	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2304242	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2317131	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2569400	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2569754	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs284648	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs284649	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs284650	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs284651	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs284652	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs284654	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs284655	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs284656	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs284657	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs284658	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs284660	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs284661	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs284662	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs284663	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3213860	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3213861	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3745290	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3745292	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3786553	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3810174	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3810175	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3816037	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4605279	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4674	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4802116	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4802117	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4802118	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4803461	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4803462	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4803463	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4803465	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4803467	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4803468	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4803469	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55986560	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58961854	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62117461	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62117462	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6508977	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7247332	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7255918	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7258973	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8103531	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8105450	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8105833	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs878082	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs878083	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs892044	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9304593	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3826713	B3GNT8	cis	Nerve Tibial	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41880400-41894000	Weak transcription	HSMMtube	muscle
2	chr19:41882800-41895400	Weak transcription	Psoas Muscle	Psoas
3	chr19:41882800-41895600	Weak transcription	HSMM	muscle
4	chr19:41883000-41892600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr19:41883000-41895400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr19:41883000-41895600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr19:41883000-41895600	Weak transcription	Aorta	Aorta
8	chr19:41883000-41896000	Weak transcription	Small Intestine	intestine
9	chr19:41883000-41896000	Weak transcription	HUVEC	blood vessel
10	chr19:41883000-41902800	Weak transcription	Stomach Mucosa	stomach
11	chr19:41883200-41892600	Weak transcription	NHLF	lung
12	chr19:41883200-41892800	Weak transcription	Brain Substantia Nigra	brain
13	chr19:41883200-41892800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr19:41883200-41893200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr19:41883200-41893800	Weak transcription	Esophagus	oesophagus
16	chr19:41883200-41894000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr19:41883200-41894200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr19:41883200-41895400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr19:41883200-41895400	Weak transcription	Right Ventricle	heart
20	chr19:41883200-41895600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr19:41883200-41896200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr19:41883200-41896200	Weak transcription	Colonic Mucosa	Colon
23	chr19:41883200-41896200	Weak transcription	Fetal Kidney	kidney
24	chr19:41883200-41897200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr19:41883200-41901400	Weak transcription	Fetal Brain Male	brain
26	chr19:41883200-41902600	Weak transcription	Right Atrium	heart
27	chr19:41883200-41902800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr19:41883200-41902800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr19:41883400-41894600	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr19:41883400-41896200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr19:41883400-41896200	Weak transcription	Osteobl	bone
32	chr19:41884400-41892800	Weak transcription	K562	blood
33	chr19:41884400-41893000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr19:41884400-41893800	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr19:41884400-41894000	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr19:41884400-41894200	Weak transcription	Colon Smooth Muscle	Colon
37	chr19:41884600-41892600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr19:41884600-41892800	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr19:41884600-41893200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr19:41884600-41894600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr19:41884600-41896200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr19:41884600-41902400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr19:41884800-41892600	Weak transcription	Fetal Thymus	thymus
44	chr19:41884800-41893000	Weak transcription	HepG2	liver
45	chr19:41885200-41892800	Weak transcription	Primary hematopoietic stem cells	blood
46	chr19:41886200-41896600	Weak transcription	Hela-S3	cervix
47	chr19:41886400-41892400	Weak transcription	Primary B cells from cord blood	blood
48	chr19:41886400-41902800	Weak transcription	NHDF-Ad	bronchial
49	chr19:41886600-41896200	Weak transcription	NH-A	brain
50	chr19:41887000-41898200	Strong transcription	Fetal Muscle Leg	muscle

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