Variant report

Variant	rs3827441
Chromosome Location	chrX:78426293-78426294
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chrX:78426057-78426330	HL-60	blood:	n/a	n/a
2	POLR2A	chrX:78426127-78426327	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
GPR174	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12396362	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3810711	0.88[MEX][hapmap]
rs3810712	0.88[MEX][hapmap]
rs3827440	0.88[MEX][hapmap]
rs5912788	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5912789	0.88[MEX][hapmap]
rs5912791	0.88[MEX][hapmap]
rs5959237	0.83[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394349	chrX:77977388-78779139	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932683	chrX:78373033-79166725	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869186	chrX:78392001-79166725	Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:78418400-78426600	Weak transcription	Thymus	Thymus
2	chrX:78418400-78426800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chrX:78418600-78426800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chrX:78420800-78426600	Enhancers	Primary hematopoietic stem cells	blood
5	chrX:78422800-78427000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chrX:78423000-78433200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chrX:78423000-78439600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chrX:78423200-78426600	Weak transcription	GM12878-XiMat	blood
9	chrX:78423200-78428200	Strong transcription	Dnd41	blood
10	chrX:78423800-78426400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chrX:78424600-78426800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chrX:78425000-78427200	Genic enhancers	Primary T cells fromperipheralblood	blood
13	chrX:78425000-78428800	Strong transcription	Fetal Thymus	thymus
14	chrX:78425000-78429600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chrX:78425200-78426400	Enhancers	Primary B cells from cord blood	blood
16	chrX:78425600-78426800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chrX:78425600-78427400	Genic enhancers	Primary B cells from peripheral blood	blood
18	chrX:78425600-78427400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chrX:78425800-78426400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chrX:78426000-78427800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
21	chrX:78426000-78428200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chrX:78426000-78428400	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
23	chrX:78426200-78426600	Enhancers	Primary T cells from cord blood	blood
24	chrX:78426200-78428400	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
25	chrX:78426200-78428800	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood

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