Variant report

Variant	rs3829483
Chromosome Location	chr15:34503867-34503868
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:34499795..34503886-chr15:34627014..34631557,6	K562	blood:
2	chr15:34500839..34504564-chr15:34529168..34532268,3	K562	blood:
3	chr15:34391225..34395745-chr15:34498845..34504196,8	K562	blood:
4	chr15:34502586..34504102-chr15:34521539..34524042,2	K562	blood:
5	chr15:34497680..34504001-chr15:34514973..34521212,14	K562	blood:
6	chr15:34491377..34494902-chr15:34500682..34503965,3	K562	blood:

Variant related genes	Relation type
ENSG00000134152	Chromatin interaction
ENSG00000128463	Chromatin interaction
ENSG00000182405	Chromatin interaction
ENSG00000140199	Chromatin interaction
ENSG00000134153	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10152261	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11852315	0.88[ASN][1000 genomes]
rs11853345	0.88[ASN][1000 genomes]
rs11853347	0.88[ASN][1000 genomes]
rs11854298	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11856753	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11857604	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11857608	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11858527	0.88[ASN][1000 genomes]
rs17236749	0.88[ASN][1000 genomes]
rs17554484	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17817770	0.88[ASN][1000 genomes]
rs2118159	0.88[ASN][1000 genomes]
rs2118160	0.88[ASN][1000 genomes]
rs28406544	0.88[ASN][1000 genomes]
rs3764236	0.88[ASN][1000 genomes]
rs41405647	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4486849	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4581678	0.88[ASN][1000 genomes]
rs55801303	0.88[ASN][1000 genomes]
rs6495624	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7161944	0.88[ASN][1000 genomes]
rs7168139	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7176526	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7179249	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7183568	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73382081	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73382086	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73384011	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7497666	0.83[ASN][1000 genomes]
rs8037674	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9672345	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9672434	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9672496	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9672544	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9672784	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9806468	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052804	chr15:34498529-34841447	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv542341	chr15:34498529-34841447	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv1045173	chr15:34501055-34596995	Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34502400-34504400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr15:34502400-34504600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr15:34502400-34504600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:34502400-34504600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:34502400-34504600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:34502400-34504600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:34502600-34504400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr15:34502600-34506200	Weak transcription	Fetal Thymus	thymus
9	chr15:34502600-34510000	Weak transcription	NHLF	lung
10	chr15:34502800-34504600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr15:34503200-34504600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr15:34503600-34506600	Weak transcription	K562	blood
13	chr15:34503800-34506000	Enhancers	HUES48 Cell Line	embryonic stem cell

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