Variant report

Variant	rs3829940
Chromosome Location	chr11:46879973-46879974
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46866397..46870100-chr11:46875347..46881800,8	K562	blood:
2	chr11:46876816..46880260-chr11:46880871..46884837,6	MCF-7	breast:
3	chr11:46879162..46881654-chr11:46902746..46905696,2	K562	blood:
4	chr11:46877702..46879223-chr11:46879914..46882633,2	K562	blood:

Variant related genes	Relation type
ENSG00000247675	Chromatin interaction
ENSG00000175216	Chromatin interaction
ENSG00000134569	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1007738	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10734548	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10734549	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10742784	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10769208	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10769211	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769212	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10838620	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10838624	0.98[ASN][1000 genomes]
rs10838627	0.91[ASN][1000 genomes]
rs10838628	0.91[ASN][1000 genomes]
rs10838629	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11038994	0.92[ASN][1000 genomes]
rs11038999	0.94[ASN][1000 genomes]
rs11039002	0.96[ASN][1000 genomes]
rs11039014	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11039017	0.91[ASN][1000 genomes]
rs11039018	0.84[ASN][1000 genomes]
rs11039024	0.80[ASN][1000 genomes]
rs11602036	0.87[ASN][1000 genomes]
rs12575609	0.90[ASN][1000 genomes]
rs12806577	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12807111	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1551744	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1809293	0.98[ASN][1000 genomes]
rs2035068	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2290883	0.98[ASN][1000 genomes]
rs2290884	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2306026	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2306027	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2306028	0.98[ASN][1000 genomes]
rs2306033	0.97[ASN][1000 genomes]
rs2306035	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2306036	0.85[ASN][1000 genomes]
rs2306037	0.83[ASN][1000 genomes]
rs2903522	0.80[AMR][1000 genomes]
rs3816614	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4075619	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4294527	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4453193	0.87[ASN][1000 genomes]
rs4453194	0.84[ASN][1000 genomes]
rs4469848	0.92[ASN][1000 genomes]
rs4534535	0.87[ASN][1000 genomes]
rs4752933	0.88[ASN][1000 genomes]
rs4752936	0.92[ASN][1000 genomes]
rs4752940	0.96[ASN][1000 genomes]
rs4752941	0.94[ASN][1000 genomes]
rs4752946	0.98[ASN][1000 genomes]
rs4752947	0.98[ASN][1000 genomes]
rs60258676	0.98[ASN][1000 genomes]
rs6485692	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6485695	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7101374	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7107778	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7109707	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7118170	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7119247	0.90[ASN][1000 genomes]
rs7480140	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7480260	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7929294	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7934421	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7940441	0.84[EUR][1000 genomes]
rs7940578	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7940682	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7941252	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7941894	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7941964	0.88[ASN][1000 genomes]
rs7943866	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs898604	0.85[ASN][1000 genomes]
rs964551	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46868000-46909000	Weak transcription	Small Intestine	intestine
2	chr11:46868200-46880000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:46868400-46880200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:46868400-46880400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr11:46868400-46884200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:46868600-46880000	Weak transcription	Brain Angular Gyrus	brain
7	chr11:46868600-46880000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr11:46868600-46880000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr11:46868600-46885400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:46868600-46894400	Weak transcription	HMEC	breast
11	chr11:46868600-46895200	Weak transcription	Fetal Heart	heart
12	chr11:46868600-46917400	Weak transcription	Fetal Brain Male	brain
13	chr11:46868800-46884200	Weak transcription	NHEK	skin
14	chr11:46868800-46913000	Weak transcription	A549	lung
15	chr11:46869000-46880200	Weak transcription	Brain Germinal Matrix	brain
16	chr11:46869000-46886800	Weak transcription	NHDF-Ad	bronchial
17	chr11:46872600-46880400	Weak transcription	Esophagus	oesophagus
18	chr11:46873400-46882200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr11:46874200-46880000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr11:46875600-46917200	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr11:46875800-46880000	Weak transcription	Placenta	Placenta
22	chr11:46876000-46905200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:46876200-46880600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr11:46876200-46894600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr11:46876600-46889400	Weak transcription	Colonic Mucosa	Colon
26	chr11:46876600-46911400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr11:46876600-46916600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr11:46877000-46881600	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr11:46877000-46882400	Weak transcription	NH-A	brain
30	chr11:46877000-46884600	Weak transcription	Gastric	stomach
31	chr11:46877200-46880400	Weak transcription	K562	blood
32	chr11:46877200-46887400	Strong transcription	Brain Anterior Caudate	brain
33	chr11:46877400-46880000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:46877400-46880000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr11:46877400-46880000	Strong transcription	Fetal Muscle Trunk	muscle
36	chr11:46877400-46880000	Weak transcription	Pancreas	Pancrea
37	chr11:46877400-46888800	Weak transcription	Psoas Muscle	Psoas
38	chr11:46877400-46909200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr11:46877400-46909200	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr11:46877400-46912000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr11:46877400-46912600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr11:46877600-46919000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr11:46877800-46881000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
44	chr11:46877800-46886600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr11:46877800-46891200	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr11:46877800-46912200	Strong transcription	Fetal Stomach	stomach
47	chr11:46877800-46912400	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr11:46878000-46880000	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr11:46878000-46881400	Enhancers	Primary hematopoietic stem cells short term culture	blood
50	chr11:46878000-46889800	Weak transcription	Aorta	Aorta

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