Variant report

Variant	rs3844130
Chromosome Location	chr10:52992491-52992492
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10490978	0.94[ASN][1000 genomes]
rs10822481	0.85[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs10822496	0.82[ASN][1000 genomes]
rs1865645	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1915672	0.94[ASN][1000 genomes]
rs1915673	0.92[ASN][1000 genomes]
rs1915674	0.90[ASN][1000 genomes]
rs2219884	0.91[ASN][1000 genomes]
rs7079584	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9943367	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9943368	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52984000-52992800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:52987800-52992600	Weak transcription	Right Atrium	heart
3	chr10:52987800-52992600	Weak transcription	Right Ventricle	heart
4	chr10:52988200-52992800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:52990400-52992800	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr10:52990600-52992800	Enhancers	Fetal Muscle Leg	muscle
7	chr10:52990600-52993800	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr10:52991000-52993400	Enhancers	Rectal Smooth Muscle	rectum
9	chr10:52991200-52992600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr10:52991200-53003000	Weak transcription	Left Ventricle	heart
11	chr10:52991400-52996600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:52992000-52993600	Weak transcription	Hela-S3	cervix
13	chr10:52992000-53006200	Weak transcription	Aorta	Aorta
14	chr10:52992200-53003600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:52992200-53009600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr10:52992400-52993000	Enhancers	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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