Variant report

Variant	rs3846756
Chromosome Location	chr6:75061918-75061919
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11752582	0.85[AMR][1000 genomes]
rs16884690	0.83[ASN][1000 genomes]
rs16884715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16884731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16884733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16884746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16884854	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs41367946	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4385272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4441922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56020332	1.00[AFR][1000 genomes]
rs56168817	1.00[AFR][1000 genomes]
rs56168999	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs56206543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6926572	0.81[ASN][1000 genomes]
rs72958951	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72958964	0.83[ASN][1000 genomes]
rs72958991	0.83[ASN][1000 genomes]
rs72959619	1.00[AFR][1000 genomes]
rs72960934	0.85[AMR][1000 genomes]
rs72967284	1.00[AFR][1000 genomes]
rs72967286	1.00[AFR][1000 genomes]
rs72967291	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs72969227	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72969239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72969247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72969251	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758061	chr6:74961996-75128165	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2759442	chr6:74961996-75162222	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv886165	chr6:74981125-75070742	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv35015	chr6:75031337-75154143	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2757178	chr6:75060947-75162222	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75060400-75062000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr6:75061200-75062000	Enhancers	HSMMtube	muscle
3	chr6:75061200-75065600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:75061600-75066800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr6:75061600-75067000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:75061800-75065600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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