Variant report

Variant	rs3847613
Chromosome Location	chr11:35338345-35338346
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35338073..35340273-chr11:35341341..35343774,3	MCF-7	breast:
2	chr11:35315763..35317448-chr11:35338066..35339856,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1042113	0.84[CHB][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap]
rs10444271	0.84[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes]
rs10488816	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs10488817	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs10488818	0.84[CHB][hapmap];0.90[JPT][hapmap];0.84[MEX][hapmap]
rs10836373	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11033057	0.81[AMR][1000 genomes]
rs11033060	0.81[AMR][1000 genomes]
rs11033064	0.94[JPT][hapmap]
rs11033071	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.91[TSI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033080	0.95[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11033083	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11033089	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11033090	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12418812	0.81[AMR][1000 genomes]
rs12420201	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12574069	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16927292	0.92[CHB][hapmap];0.90[JPT][hapmap];0.84[MEX][hapmap];0.81[AMR][1000 genomes]
rs2273687	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2901534	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3794087	0.84[ASW][hapmap];0.95[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3794097	0.84[CHB][hapmap];0.90[JPT][hapmap];0.84[MEX][hapmap];0.81[AMR][1000 genomes]
rs3847612	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3847620	0.95[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3891872	0.92[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes]
rs3911898	0.90[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3925877	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4083481	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs41352148	0.84[CHB][hapmap];0.90[JPT][hapmap];0.84[MEX][hapmap]
rs41427147	0.84[CHB][hapmap];0.90[JPT][hapmap];0.89[MEX][hapmap]
rs41525047	0.84[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes]
rs4237664	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4582949	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4755397	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4755398	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4756207	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs4756210	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4756211	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4756219	0.95[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[TSI][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4756220	0.95[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4756221	0.95[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55709010	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55834429	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56028027	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6484785	0.86[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs7114383	0.95[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.83[TSI][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72076042	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs752949	0.84[CHB][hapmap];0.84[JPT][hapmap];0.85[MEX][hapmap]
rs7934047	0.95[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[TSI][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758264	chr11:35319320-35480522	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759819	chr11:35319320-35480522	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35324400-35343200	Weak transcription	Gastric	stomach
2	chr11:35325200-35339000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:35325600-35339200	Strong transcription	Cortex derived primary cultured neurospheres	brain
4	chr11:35327000-35343400	Weak transcription	Fetal Lung	lung
5	chr11:35327200-35340600	Weak transcription	Brain Substantia Nigra	brain
6	chr11:35327400-35339000	Weak transcription	Aorta	Aorta
7	chr11:35327800-35340400	Weak transcription	Brain Hippocampus Middle	brain
8	chr11:35327800-35340800	Weak transcription	NHLF	lung
9	chr11:35329600-35340800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr11:35329800-35340600	Weak transcription	Brain Angular Gyrus	brain
11	chr11:35330000-35340800	Weak transcription	Fetal Brain Male	brain
12	chr11:35332000-35343800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr11:35332400-35340800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr11:35335400-35340400	Weak transcription	Primary T cells from cord blood	blood
15	chr11:35335400-35340400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr11:35335400-35340600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr11:35335600-35338800	Weak transcription	Psoas Muscle	Psoas
18	chr11:35335600-35340600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr11:35335600-35340800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr11:35335600-35341800	Weak transcription	Brain Anterior Caudate	brain
21	chr11:35335600-35342800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr11:35335600-35343200	Weak transcription	Left Ventricle	heart
23	chr11:35335600-35343200	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr11:35336200-35339000	Strong transcription	HepG2	liver
25	chr11:35336200-35339800	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr11:35336400-35339600	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr11:35336600-35338400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr11:35336600-35338800	Weak transcription	Primary B cells from cord blood	blood
29	chr11:35336800-35340000	Weak transcription	Liver	Liver
30	chr11:35337800-35338800	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr11:35337800-35339000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
32	chr11:35337800-35341400	Enhancers	GM12878-XiMat	blood
33	chr11:35338000-35338400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
34	chr11:35338000-35338600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr11:35338000-35338800	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr11:35338000-35338800	Strong transcription	Fetal Brain Female	brain
37	chr11:35338000-35339000	Strong transcription	Brain Germinal Matrix	brain
38	chr11:35338000-35339000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr11:35338000-35339400	Enhancers	Pancreas	Pancrea
40	chr11:35338000-35340000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr11:35338000-35341400	Enhancers	Primary B cells from peripheral blood	blood
42	chr11:35338000-35342400	Weak transcription	HSMM	muscle
43	chr11:35338000-35343000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr11:35338200-35338400	Enhancers	Primary T helper naive cells from peripheral blood	blood
45	chr11:35338200-35338600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr11:35338200-35338800	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr11:35338200-35339000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr11:35338200-35340400	Weak transcription	NHDF-Ad	bronchial
49	chr11:35338200-35341000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr11:35338200-35343400	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links