Variant report

Variant	rs3847614
Chromosome Location	chr11:35347758-35347759
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:35346814..35348373-chr11:35382181..35384573,2	MCF-7	breast:
2	chr11:35345419..35347819-chr11:35411682..35413495,2	MCF-7	breast:
3	chr11:35344359..35345870-chr11:35346379..35348806,2	MCF-7	breast:
4	chr11:35295425..35298898-chr11:35346407..35348803,4	MCF-7	breast:
5	chr11:35345567..35348254-chr11:35351098..35354051,2	K562	blood:
6	chr11:35315979..35318864-chr11:35345631..35348466,2	MCF-7	breast:
7	chr11:35345181..35347879-chr11:35376874..35378996,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7111018	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758264	chr11:35319320-35480522	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759819	chr11:35319320-35480522	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35339000-35358000	Weak transcription	HepG2	liver
2	chr11:35340400-35348400	Enhancers	NHDF-Ad	bronchial
3	chr11:35341200-35351200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr11:35341200-35351400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:35341400-35349400	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr11:35341400-35350200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr11:35341400-35351400	Weak transcription	Primary B cells from peripheral blood	blood
8	chr11:35342000-35348600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:35342600-35351400	Weak transcription	Brain Angular Gyrus	brain
10	chr11:35343800-35351200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:35344200-35352600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr11:35344400-35350400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:35344400-35351600	Weak transcription	Fetal Brain Male	brain
14	chr11:35344400-35352000	Weak transcription	Brain Hippocampus Middle	brain
15	chr11:35344400-35352600	Weak transcription	Gastric	stomach
16	chr11:35344400-35353200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:35344600-35347800	Weak transcription	Brain Anterior Caudate	brain
18	chr11:35344600-35350000	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr11:35344600-35351200	Weak transcription	Left Ventricle	heart
20	chr11:35345600-35349400	Weak transcription	Psoas Muscle	Psoas
21	chr11:35345800-35347800	Weak transcription	Pancreas	Pancrea
22	chr11:35346400-35348200	Enhancers	HMEC	breast
23	chr11:35346400-35348200	Enhancers	NHEK	skin
24	chr11:35346400-35348400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr11:35346600-35347800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr11:35346600-35347800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr11:35346800-35348400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr11:35346800-35348400	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr11:35346800-35349200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr11:35346800-35349200	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr11:35347000-35351400	Weak transcription	HSMMtube	muscle
32	chr11:35347000-35356000	Weak transcription	NHLF	lung
33	chr11:35347400-35348600	Enhancers	Stomach Smooth Muscle	stomach
34	chr11:35347600-35348200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr11:35347600-35348400	Enhancers	Hela-S3	cervix
36	chr11:35347600-35348600	Enhancers	Colon Smooth Muscle	Colon
37	chr11:35347600-35349000	Strong transcription	Cortex derived primary cultured neurospheres	brain
38	chr11:35347600-35350400	Enhancers	Placenta	Placenta

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