Variant report

Variant	rs3847619
Chromosome Location	chr11:35360747-35360748
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:35360058..35364651-chr11:35365186..35370074,5	K562	blood:
2	chr11:35360349..35364651-chr11:35366832..35371612,5	K562	blood:
3	chr11:35358795..35361684-chr11:35361699..35364606,3	K562	blood:
4	chr11:35359115..35360850-chr11:35385171..35387976,3	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10836372	0.94[EUR][1000 genomes]
rs10836376	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10836377	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10836378	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11033073	0.95[CEU][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11033079	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11033086	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11033087	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12273644	0.95[CEU][hapmap];0.94[EUR][1000 genomes]
rs1885343	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4756209	0.94[EUR][1000 genomes]
rs4756212	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4756214	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7110985	0.90[CEU][hapmap];0.95[EUR][1000 genomes]
rs7939421	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7942395	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7942586	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7942698	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758264	chr11:35319320-35480522	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759819	chr11:35319320-35480522	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35352800-35361600	Weak transcription	Left Ventricle	heart
2	chr11:35353000-35361600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr11:35354000-35367800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:35354400-35366000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:35354600-35361600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:35354600-35366000	Weak transcription	Brain Substantia Nigra	brain
7	chr11:35354800-35363200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr11:35357000-35364000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr11:35357800-35362000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr11:35357800-35362400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:35357800-35362800	Enhancers	NHDF-Ad	bronchial
12	chr11:35358000-35360800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:35358000-35361000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr11:35358000-35361000	Enhancers	NH-A	brain
15	chr11:35358000-35362600	Enhancers	NHLF	lung
16	chr11:35358400-35361600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr11:35358600-35361400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:35359000-35361000	Weak transcription	Brain Anterior Caudate	brain
19	chr11:35359200-35364600	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr11:35359400-35361000	Enhancers	NHEK	skin
21	chr11:35359400-35361200	Enhancers	Hela-S3	cervix
22	chr11:35359400-35361200	Enhancers	HMEC	breast
23	chr11:35359400-35361800	Weak transcription	Brain Cingulate Gyrus	brain
24	chr11:35359400-35363400	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr11:35359400-35364000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr11:35359600-35362800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:35359800-35362000	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr11:35360000-35361000	Weak transcription	Osteobl	bone
29	chr11:35360000-35364000	Weak transcription	K562	blood
30	chr11:35360200-35361000	Weak transcription	Brain Hippocampus Middle	brain
31	chr11:35360200-35361000	Weak transcription	Pancreas	Pancrea
32	chr11:35360200-35361600	Weak transcription	HepG2	liver
33	chr11:35360600-35361600	Weak transcription	Right Atrium	heart
34	chr11:35360600-35362200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links