Variant report

Variant	rs3849089
Chromosome Location	chr5:16156501-16156502
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11955053	0.83[AMR][1000 genomes]
rs11960118	0.83[AMR][1000 genomes]
rs2218211	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs34667413	0.83[AMR][1000 genomes]
rs3910974	0.83[AMR][1000 genomes]
rs3910975	0.83[AMR][1000 genomes]
rs3910976	0.83[AMR][1000 genomes]
rs3910977	0.83[AMR][1000 genomes]
rs3936412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4624790	0.83[AMR][1000 genomes]
rs6858941	0.83[AMR][1000 genomes]
rs6861604	0.83[AMR][1000 genomes]
rs6878743	0.83[AMR][1000 genomes]
rs6895469	0.83[AMR][1000 genomes]
rs7723127	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7727113	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830217	chr5:16004704-16225229	Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv1838286	chr5:16150721-16180167	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv1848638	chr5:16150721-16180167	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16153600-16156800	Enhancers	Fetal Heart	heart
2	chr5:16154800-16157600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:16155800-16156800	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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