Variant report

Variant	rs3851088
Chromosome Location	chr10:52930315-52930316
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:52928917..52931370-chr10:52940832..52942855,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10822299	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10995918	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1871630	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1904676	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1904677	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1904683	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1904687	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1904688	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1904689	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1904692	0.94[ASN][1000 genomes]
rs1904693	0.94[ASN][1000 genomes]
rs1904695	0.93[ASN][1000 genomes]
rs1904696	0.90[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs1904697	0.81[CHB][hapmap];0.83[ASN][1000 genomes]
rs1904698	0.81[ASN][1000 genomes]
rs2339731	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2339732	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3862576	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3862579	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3998228	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4505006	0.93[ASN][1000 genomes]
rs6479991	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7068022	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7085697	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7893773	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9414844	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415733	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9633538	0.81[CHB][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52906000-52931200	Weak transcription	Fetal Muscle Leg	muscle
2	chr10:52910000-52931000	Weak transcription	Fetal Lung	lung
3	chr10:52910600-52942400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr10:52922800-52930800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr10:52927200-52931400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:52928600-52930400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:52929000-52932600	Enhancers	NHDF-Ad	bronchial
8	chr10:52929400-52931400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr10:52929400-52931600	Enhancers	NHLF	lung
10	chr10:52929600-52930400	Enhancers	Aorta	Aorta
11	chr10:52929600-52930400	Enhancers	Psoas Muscle	Psoas
12	chr10:52929600-52930400	Enhancers	Right Atrium	heart
13	chr10:52929600-52930400	Enhancers	Right Ventricle	heart
14	chr10:52929600-52931400	Enhancers	HSMMtube	muscle
15	chr10:52929600-52931600	Enhancers	Hela-S3	cervix
16	chr10:52929600-52931800	Enhancers	Muscle Satellite Cultured Cells	--
17	chr10:52929600-52932600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:52929800-52944600	Weak transcription	Left Ventricle	heart
19	chr10:52930000-52930400	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr10:52930000-52931400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr10:52930000-52932200	Enhancers	Osteobl	bone
22	chr10:52930200-52931000	Enhancers	HSMM	muscle
23	chr10:52930200-52931600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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