Variant report

Variant	rs3857613
Chromosome Location	chr6:56111742-56111743
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12528835	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1925157	1.00[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1925164	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2397214	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4355611	0.88[ASN][1000 genomes]
rs7765410	0.88[ASN][1000 genomes]
rs7769092	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9357898	0.82[ASN][1000 genomes]
rs9357899	0.88[ASN][1000 genomes]
rs9396187	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56106600-56112000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:56107400-56111800	Weak transcription	HMEC	breast
3	chr6:56109200-56111800	Weak transcription	Esophagus	oesophagus
4	chr6:56109400-56113000	Active TSS	Aorta	Aorta
5	chr6:56110200-56111800	Active TSS	Fetal Stomach	stomach
6	chr6:56110400-56111800	Active TSS	Duodenum Smooth Muscle	Duodenum
7	chr6:56110400-56112000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
8	chr6:56110400-56112000	Active TSS	Fetal Muscle Trunk	muscle
9	chr6:56110400-56112000	Enhancers	Stomach Mucosa	stomach
10	chr6:56110400-56112000	Enhancers	HSMMtube	muscle
11	chr6:56110400-56112800	Active TSS	Fetal Kidney	kidney
12	chr6:56110800-56111800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr6:56110800-56112000	Active TSS	Fetal Muscle Leg	muscle
14	chr6:56110800-56112400	Active TSS	Fetal Lung	lung
15	chr6:56111000-56111800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:56111000-56111800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:56111000-56111800	Active TSS	Brain Hippocampus Middle	brain
18	chr6:56111000-56112000	Enhancers	Liver	Liver
19	chr6:56111000-56112600	Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chr6:56111200-56112600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
21	chr6:56111200-56112600	Active TSS	H1 Cell Line	embryonic stem cell
22	chr6:56111200-56112600	Active TSS	HUES6 Cell Line	embryonic stem cell
23	chr6:56111200-56112600	Active TSS	HUES64 Cell Line	embryonic stem cell
24	chr6:56111200-56112600	Active TSS	iPS-15b Cell Line	embryonic stem cell
25	chr6:56111200-56112600	Active TSS	Rectal Smooth Muscle	rectum
26	chr6:56111400-56111800	Active TSS	iPS-20b Cell Line	embryonic stem cell
27	chr6:56111400-56111800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr6:56111400-56111800	Active TSS	Brain Inferior Temporal Lobe	brain
29	chr6:56111400-56111800	Active TSS	Placenta	Placenta
30	chr6:56111400-56112000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
31	chr6:56111400-56112000	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
32	chr6:56111400-56112400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr6:56111400-56112400	Active TSS	HUES48 Cell Line	embryonic stem cell
34	chr6:56111400-56112600	Active TSS	H9 Cell Line	embryonic stem cell
35	chr6:56111400-56112600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr6:56111400-56112800	Active TSS	Brain Angular Gyrus	brain
37	chr6:56111400-56112800	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
38	chr6:56111400-56112800	Active TSS	Brain Substantia Nigra	brain
39	chr6:56111400-56112800	Active TSS	Colon Smooth Muscle	Colon
40	chr6:56111400-56112800	Bivalent/Poised TSS	Fetal Intestine Small	intestine
41	chr6:56111400-56112800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
42	chr6:56111400-56112800	Active TSS	NHLF	lung
43	chr6:56111400-56113000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr6:56111400-56113000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr6:56111400-56113000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr6:56111600-56111800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr6:56111600-56111800	Active TSS	Primary hematopoietic stem cells	blood
48	chr6:56111600-56111800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr6:56111600-56111800	Active TSS	Duodenum Mucosa	Duodenum
50	chr6:56111600-56111800	Bivalent/Poised TSS	Fetal Brain Male	brain

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