Variant report
| Variant | rs3858460 |
|---|---|
| Chromosome Location | chr11:32492447-32492448 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:32486682..32489640-chr11:32492435..32494827,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10742278 | 0.81[EUR][1000 genomes] |
| rs10767936 | 0.81[EUR][1000 genomes] |
| rs10767937 | 0.81[EUR][1000 genomes] |
| rs10767938 | 0.83[EUR][1000 genomes] |
| rs10835917 | 0.85[CHB][hapmap] |
| rs10835921 | 0.90[ASN][1000 genomes] |
| rs10835922 | 0.89[ASN][1000 genomes] |
| rs10835923 | 0.89[ASN][1000 genomes] |
| rs11031810 | 0.89[ASN][1000 genomes] |
| rs12222697 | 0.88[ASN][1000 genomes] |
| rs12224136 | 0.89[ASN][1000 genomes] |
| rs2073187 | 0.81[EUR][1000 genomes] |
| rs2418931 | 0.81[ASN][1000 genomes] |
| rs2418932 | 0.89[ASN][1000 genomes] |
| rs3858453 | 0.90[EUR][1000 genomes] |
| rs3858457 | 0.83[EUR][1000 genomes] |
| rs3858459 | 0.84[ASN][1000 genomes] |
| rs4304748 | 0.83[EUR][1000 genomes] |
| rs4514388 | 0.81[EUR][1000 genomes] |
| rs59518979 | 0.82[ASN][1000 genomes] |
| rs61889255 | 0.82[ASN][1000 genomes] |
| rs61889256 | 0.83[ASN][1000 genomes] |
| rs61891673 | 0.89[ASN][1000 genomes] |
| rs61891674 | 0.89[ASN][1000 genomes] |
| rs61891675 | 0.85[ASN][1000 genomes] |
| rs61891678 | 0.89[ASN][1000 genomes] |
| rs7103128 | 0.81[EUR][1000 genomes] |
| rs7115829 | 0.81[EUR][1000 genomes] |
| rs7944133 | 0.80[ASN][1000 genomes] |
| rs975665 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832108 | chr11:32395937-32560583 | Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 2 | esv2753303 | chr11:32447324-32494924 | Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | esv3412917 | chr11:32491870-32492494 | Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:32488400-32499200 | Weak transcription | K562 | blood |
| 2 | chr11:32491000-32493600 | Weak transcription | Dnd41 | blood |
