Variant report
| Variant | rs3862957 |
|---|---|
| Chromosome Location | chr1:217149753-217149754 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
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(count:2 , 50 per page) page:
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| No data |
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rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs10492955 | 1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1126020 | 1.00[EUR][1000 genomes] |
| rs12088511 | 1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12095308 | 1.00[EUR][1000 genomes] |
| rs12095404 | 1.00[EUR][1000 genomes] |
| rs17043992 | 1.00[EUR][1000 genomes] |
| rs1865919 | 1.00[EUR][1000 genomes] |
| rs2818749 | 1.00[EUR][1000 genomes] |
| rs2818750 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv468149 | chr1:217134966-217203091 | Enhancers Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 2 | nsv549204 | chr1:217134966-217203091 | Weak transcription Enhancers | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv428610 | chr1:217143317-217307243 | Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
