Variant report

Variant	rs3885017
Chromosome Location	chr11:57153318-57153319
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17151863	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17151872	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17151883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3885018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3887124	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3887125	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55820514	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58065412	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59832434	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7122513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv530621	chr11:57139699-57703639	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57144800-57154800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:57149200-57171000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:57151000-57170200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:57151200-57154600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr11:57151200-57154600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:57151200-57155600	Enhancers	K562	blood
7	chr11:57151200-57157400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr11:57152400-57153600	Weak transcription	Psoas Muscle	Psoas
9	chr11:57153000-57155400	Enhancers	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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