Variant report

Variant	rs3887498
Chromosome Location	chr4:86595074-86595075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1482097	0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2869363	0.83[YRI][hapmap]
rs28711946	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs4693124	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv829999	chr4:86500257-86666019	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86589000-86601600	Weak transcription	HSMMtube	muscle
2	chr4:86590000-86604600	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr4:86591400-86619400	Weak transcription	Pancreas	Pancrea
4	chr4:86592000-86597600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr4:86592200-86595400	Enhancers	NHDF-Ad	bronchial
6	chr4:86593200-86597400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:86593600-86596000	Enhancers	GM12878-XiMat	blood
8	chr4:86594000-86595400	Weak transcription	Fetal Stomach	stomach
9	chr4:86594000-86595600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:86594000-86595600	Enhancers	Primary B cells from peripheral blood	blood
11	chr4:86594000-86596800	Weak transcription	Left Ventricle	heart
12	chr4:86594000-86597800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr4:86594200-86596200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr4:86594400-86595200	Weak transcription	Fetal Muscle Leg	muscle
15	chr4:86594400-86596000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr4:86594400-86596400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr4:86594400-86596400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr4:86594400-86596600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr4:86594400-86598400	Weak transcription	Right Atrium	heart
20	chr4:86594400-86601400	Weak transcription	Spleen	Spleen
21	chr4:86594400-86601600	Weak transcription	HSMM	muscle
22	chr4:86594600-86597600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr4:86594600-86600000	Weak transcription	Primary hematopoietic stem cells	blood
24	chr4:86594800-86595200	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr4:86594800-86597800	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr4:86595000-86595200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr4:86595000-86596800	Strong transcription	Primary B cells from cord blood	blood
28	chr4:86595000-86597800	Weak transcription	Fetal Heart	heart
29	chr4:86595000-86600000	Weak transcription	Primary monocytes fromperipheralblood	blood

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