Variant report

Variant	rs3887728
Chromosome Location	chr12:49972332-49972333
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr12:49972274-49972646	HEK293-T-REx	kidney:	n/a	n/a
2	TCF7L2	chr12:49972282-49972455	Hela-S3	cervix:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:49959993..49964620-chr12:49965374..49976382,20	MCF-7	breast:
2	chr12:49958946..49963914-chr12:49967568..49975925,12	MCF-7	breast:
3	chr12:49971477..49974085-chr12:49975379..49977861,2	MCF-7	breast:
4	chr12:49962867..49964959-chr12:49972007..49974153,2	K562	blood:
5	chr12:49970745..49972990-chr12:49975161..49977938,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000257964	TF binding region
ENSG00000187778	Chromatin interaction
ENSG00000110844	Chromatin interaction

Extended variants
information (count: 143 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:141)

rs_ID	r²[population]
rs10219602	1.00[CHB][hapmap]
rs1049986	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1078216	1.00[CHB][hapmap]
rs10783314	1.00[CHB][hapmap]
rs10875964	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10875968	1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs11169063	0.93[CHD][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs11169065	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11169069	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11169070	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11169073	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11169076	1.00[CEU][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11169080	0.93[CHD][hapmap];0.85[JPT][hapmap];0.92[MEX][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11169081	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11169082	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11169092	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11169097	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11169101	0.85[JPT][hapmap]
rs11169104	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11169106	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11169109	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11169111	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11169112	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11169113	0.82[EUR][1000 genomes]
rs11169118	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11169125	0.88[CEU][hapmap];0.83[YRI][hapmap];0.82[EUR][1000 genomes]
rs11169127	0.88[CEU][hapmap];0.86[YRI][hapmap];0.83[EUR][1000 genomes]
rs11169128	1.00[CHB][hapmap]
rs11169130	1.00[CHB][hapmap]
rs11169133	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1150057	0.85[JPT][hapmap]
rs11833411	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11834380	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12296586	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12299505	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12299513	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12301824	0.82[EUR][1000 genomes]
rs12303310	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12304796	0.83[EUR][1000 genomes]
rs12306114	1.00[CHB][hapmap]
rs12308256	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12309940	0.84[EUR][1000 genomes]
rs12310510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12311527	0.94[ASN][1000 genomes]
rs12311839	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12314795	0.86[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12314878	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12315224	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12315791	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12316284	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.82[YRI][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12317646	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12320556	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12321169	0.83[EUR][1000 genomes]
rs12321819	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13066	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13906	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1470906	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1574326	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17123808	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17123981	1.00[CHB][hapmap]
rs1902329	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1902330	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2005195	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2241418	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2278068	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2278069	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2278070	0.97[ASN][1000 genomes]
rs2303305	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2336058	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2878532	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs35275181	1.00[CHB][hapmap]
rs3815832	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.90[TSI][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3887727	0.93[CHD][hapmap];0.85[JPT][hapmap];0.92[MEX][hapmap];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4045193	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4073998	0.82[JPT][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4133070	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4563	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4584654	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4993294	1.00[CHB][hapmap]
rs52824916	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55853522	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57191490	0.80[ASN][1000 genomes]
rs57342147	0.83[ASN][1000 genomes]
rs57463238	0.82[EUR][1000 genomes]
rs57916875	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58278271	0.91[ASN][1000 genomes]
rs58446833	0.83[EUR][1000 genomes]
rs59233136	0.81[ASN][1000 genomes]
rs59849800	0.83[EUR][1000 genomes]
rs59940006	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60121503	0.80[ASN][1000 genomes]
rs60402517	0.84[EUR][1000 genomes]
rs61512987	0.84[ASN][1000 genomes]
rs61620972	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61710637	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6580719	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7131915	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7132792	0.86[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7136052	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7136772	1.00[CHB][hapmap]
rs7137976	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7296281	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7299002	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7299609	0.92[MEX][hapmap]
rs7301209	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7309607	0.81[ASN][1000 genomes]
rs7312658	0.81[ASN][1000 genomes]
rs7313738	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73305008	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73305012	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73305085	0.81[ASN][1000 genomes]
rs73305098	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73306808	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73309030	0.83[EUR][1000 genomes]
rs74089182	0.80[ASN][1000 genomes]
rs7688	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7952734	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7952938	0.86[ASN][1000 genomes]
rs7953911	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7954994	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7955586	0.81[ASN][1000 genomes]
rs7956089	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7956181	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7962645	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7962863	0.93[CHD][hapmap];0.85[JPT][hapmap];0.85[MEX][hapmap]
rs7963954	0.85[CHD][hapmap];0.85[JPT][hapmap]
rs7965658	1.00[CHB][hapmap];0.93[CHD][hapmap];0.85[JPT][hapmap];0.97[ASN][1000 genomes]
rs7967624	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7970241	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.90[TSI][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7973389	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7975599	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.93[YRI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7977389	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7979262	0.86[CEU][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7979285	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7980979	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8626	0.93[CHD][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs876889	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs897056	0.81[ASN][1000 genomes]
rs933738	0.94[ASN][1000 genomes]
rs9804749	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9804971	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832406	chr12:49860693-50062136	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv482795	chr12:49897633-50068686	Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:49962800-49974200	Weak transcription	Esophagus	oesophagus
2	chr12:49962800-49974200	Weak transcription	Placenta	Placenta
3	chr12:49963000-49974000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr12:49963000-49974000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr12:49963000-49974000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr12:49963000-49974000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr12:49963000-49974000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr12:49963000-49974000	Weak transcription	Brain Angular Gyrus	brain
9	chr12:49963000-49974000	Weak transcription	Brain Hippocampus Middle	brain
10	chr12:49963000-49974000	Weak transcription	Brain Substantia Nigra	brain
11	chr12:49963000-49974000	Weak transcription	HSMMtube	muscle
12	chr12:49963000-49974200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr12:49963000-49974200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr12:49963000-49974200	Weak transcription	Duodenum Mucosa	Duodenum
15	chr12:49963000-49974200	Weak transcription	Fetal Kidney	kidney
16	chr12:49963000-49974200	Weak transcription	Fetal Lung	lung
17	chr12:49963000-49974200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr12:49963000-49979200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr12:49963000-49979200	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr12:49963000-49982200	Weak transcription	NHLF	lung
21	chr12:49963000-49984800	Weak transcription	Small Intestine	intestine
22	chr12:49963000-50003200	Weak transcription	Aorta	Aorta
23	chr12:49963200-49974000	Weak transcription	Brain Anterior Caudate	brain
24	chr12:49963200-49974000	Weak transcription	Brain Cingulate Gyrus	brain
25	chr12:49963200-49974000	Weak transcription	A549	lung
26	chr12:49963200-49974000	Weak transcription	HSMM	muscle
27	chr12:49963200-49974200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr12:49963200-49974200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr12:49963200-49974200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr12:49963200-49974200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr12:49963200-49974200	Weak transcription	Colonic Mucosa	Colon
32	chr12:49963200-49974200	Weak transcription	Fetal Intestine Large	intestine
33	chr12:49963200-49974200	Weak transcription	Fetal Thymus	thymus
34	chr12:49963200-49974200	Weak transcription	Pancreas	Pancrea
35	chr12:49963200-49974200	Weak transcription	Psoas Muscle	Psoas
36	chr12:49963200-49974200	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr12:49963200-49974400	Weak transcription	HUVEC	blood vessel
38	chr12:49963200-49974600	Weak transcription	HMEC	breast
39	chr12:49963200-49976400	Weak transcription	Osteobl	bone
40	chr12:49963200-49977200	Weak transcription	Thymus	Thymus
41	chr12:49963200-49977200	Weak transcription	NHEK	skin
42	chr12:49963200-49986800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr12:49963400-49974200	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr12:49963400-49984800	Weak transcription	Primary B cells from cord blood	blood
45	chr12:49963600-49972400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr12:49963600-49974200	Weak transcription	Adipose Nuclei	Adipose
47	chr12:49963600-49977000	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr12:49963800-49974000	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr12:49963800-49974000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr12:49964000-49974000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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