Variant report

Variant	rs3898077
Chromosome Location	chr6:74959122-74959123
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11751175	0.85[JPT][hapmap]
rs11752920	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11754468	0.92[EUR][1000 genomes]
rs11758445	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11759133	0.92[EUR][1000 genomes]
rs12206043	0.88[JPT][hapmap]
rs16884519	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16884624	0.94[EUR][1000 genomes]
rs16884690	0.92[EUR][1000 genomes]
rs1817735	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4644011	0.88[JPT][hapmap]
rs55768795	0.86[EUR][1000 genomes]
rs55784940	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55962148	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56004196	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56020332	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56168817	0.92[EUR][1000 genomes]
rs56232317	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67076726	0.94[EUR][1000 genomes]
rs6926572	0.92[EUR][1000 genomes]
rs72950543	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72950546	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72953763	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72954314	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72957983	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72957986	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72957999	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72959615	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72959617	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72959619	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72964214	0.85[AMR][1000 genomes]
rs72967265	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72967284	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72967286	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72967291	0.84[EUR][1000 genomes]
rs7755776	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7776273	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9359077	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3327625	chr6:74716120-74971605	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv886162	chr6:74903797-75006170	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886163	chr6:74944460-75006170	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
4	nsv886164	chr6:74944460-75024313	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74958000-74961400	Enhancers	HUVEC	blood vessel
2	chr6:74958800-74959600	Enhancers	HMEC	breast
3	chr6:74958800-74959800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:74958800-74960400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr6:74958800-74960800	Enhancers	NHEK	skin
6	chr6:74958800-74961400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:74959000-74959400	Enhancers	Fetal Intestine Small	intestine
8	chr6:74959000-74959600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:74959000-74961200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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