Variant report

Variant	rs3899315
Chromosome Location	chr1:220844331-220844332
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:220843694..220846448-chr1:220920771..220922652,2	K562	blood:

Variant related genes	Relation type
ENSG00000117791	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10495149	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10746403	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs10779412	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs10779413	0.87[ASN][1000 genomes]
rs10779414	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs10863561	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11118567	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11118570	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11118573	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11118576	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11118584	0.90[ASN][1000 genomes]
rs11118588	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11118589	0.83[EUR][1000 genomes]
rs11588721	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1193032	0.84[ASN][1000 genomes]
rs12044432	0.85[ASN][1000 genomes]
rs12126252	0.82[ASN][1000 genomes]
rs12408540	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2152836	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2244448	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2378400	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2589586	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2589589	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2786606	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2786610	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2786617	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2889895	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3753873	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs3753874	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs3767319	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs3767320	0.95[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap]
rs3767321	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs3767323	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs3820347	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs3905814	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4120669	0.81[CHB][hapmap]
rs4338357	0.90[ASN][1000 genomes]
rs4846326	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4846327	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4846655	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6541154	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6675368	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6695583	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9430949	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3899315	C1orf115	cis	Nerve Tibial	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220829400-220847200	Weak transcription	Right Ventricle	heart
2	chr1:220829600-220845800	Weak transcription	Fetal Heart	heart
3	chr1:220831400-220845800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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