The 2.0 version of rSNPBase

Variant report

Variant rs3902885
Chromosome Location chr1:220958580-220958581
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:66 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:220922800-220959600 Weak transcription Pancreatic Islets Pancreatic Islet
2 chr1:220922800-220959600 Weak transcription Placenta Amnion Placenta Amnion
3 chr1:220925000-220959400 Weak transcription Brain Angular Gyrus brain
4 chr1:220930000-220959600 Weak transcription Psoas Muscle Psoas
5 chr1:220930400-220959600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
6 chr1:220931200-220959000 Weak transcription Brain Substantia Nigra brain
7 chr1:220936200-220959600 Weak transcription A549 lung
8 chr1:220939000-220960400 Weak transcription Small Intestine intestine
9 chr1:220943000-220959000 Strong transcription Fetal Intestine Large intestine
10 chr1:220944200-220959200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
11 chr1:220944200-220959400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
12 chr1:220944200-220959400 Weak transcription Fetal Kidney kidney
13 chr1:220944200-220959600 Weak transcription NHLF lung
14 chr1:220944200-220959800 Weak transcription Gastric stomach
15 chr1:220944400-220958800 Weak transcription Cortex derived primary cultured neurospheres brain
16 chr1:220944400-220959000 Weak transcription Breast Myoepithelial Primary Cells Breast
17 chr1:220944400-220959200 Weak transcription Rectal Smooth Muscle rectum
18 chr1:220944400-220959400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
19 chr1:220944400-220959400 Weak transcription Colonic Mucosa Colon
20 chr1:220944400-220959400 Weak transcription Right Ventricle heart
21 chr1:220945800-220959200 Weak transcription Colon Smooth Muscle Colon
22 chr1:220946600-220958600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
23 chr1:220946800-220958800 Weak transcription Sigmoid Colon Sigmoid Colon
24 chr1:220950200-220959200 Weak transcription Brain Cingulate Gyrus brain
25 chr1:220950400-220959400 Weak transcription Brain Inferior Temporal Lobe brain
26 chr1:220950600-220958800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
27 chr1:220950600-220959000 Weak transcription Fetal Heart heart
28 chr1:220950600-220959400 Weak transcription Right Atrium heart
29 chr1:220952400-220958800 Weak transcription Rectal Mucosa Donor 31 rectum
30 chr1:220953200-220959600 Weak transcription Lung lung
31 chr1:220953800-220959200 Weak transcription Ovary ovary
32 chr1:220954800-220958600 Weak transcription HUES48 Cell Line embryonic stem cell
33 chr1:220955200-220958600 Strong transcription Fetal Muscle Leg muscle
34 chr1:220955200-220958800 Weak transcription HUES64 Cell Line embryonic stem cell
35 chr1:220956600-220959200 Strong transcription Fetal Intestine Small intestine
36 chr1:220956800-220959400 Weak transcription Placenta Placenta
37 chr1:220956800-220959600 Enhancers Hela-S3 cervix
38 chr1:220957000-220959400 Weak transcription Pancreas Pancrea
39 chr1:220957000-220959600 Weak transcription Aorta Aorta
40 chr1:220957200-220959200 Weak transcription Fetal Stomach stomach
41 chr1:220957200-220959400 Weak transcription Spleen Spleen
42 chr1:220957400-220959200 Weak transcription Duodenum Smooth Muscle Duodenum
43 chr1:220957800-220958600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
44 chr1:220957800-220959200 Weak transcription Duodenum Mucosa Duodenum
45 chr1:220957800-220959200 Weak transcription Fetal Lung lung
46 chr1:220957800-220959200 Weak transcription Skeletal Muscle Female skeletal muscle
47 chr1:220957800-220959400 Weak transcription Rectal Mucosa Donor 29 rectum
48 chr1:220958000-220958800 Enhancers iPS-18 Cell Line embryonic stem cell
49 chr1:220958000-220959200 Weak transcription Stomach Smooth Muscle stomach
50 chr1:220958000-220959400 Weak transcription Skeletal Muscle Male skeletal muscle

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Last update: Aug 31, 2015