Variant report

Variant	rs3905103
Chromosome Location	chr13:51187226-51187227
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51185399..51188219-chr13:51502643..51505475,2	K562	blood:
2	chr13:51186188..51187899-chr13:51538381..51540074,2	K562	blood:

Variant related genes	Relation type
ENSG00000136104	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1341633	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1861297	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2039100	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2039101	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2110763	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2192800	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2192801	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4942932	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4942933	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs630062	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs706596	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7325508	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7325674	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7327141	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7328789	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7333895	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7334876	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7338717	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs797479	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs797481	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs797483	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs797485	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs797487	0.89[EUR][1000 genomes]
rs797532	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9526681	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9526684	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9526685	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9535472	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9535473	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
2	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753864	chr13:51136699-51375199	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51181800-51204600	Weak transcription	Pancreas	Pancrea
2	chr13:51184400-51188200	Enhancers	Fetal Thymus	thymus
3	chr13:51184600-51188400	Enhancers	K562	blood
4	chr13:51186000-51191200	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr13:51186400-51191000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr13:51186600-51187800	Weak transcription	Left Ventricle	heart
7	chr13:51186600-51188000	Enhancers	Fetal Muscle Leg	muscle
8	chr13:51186600-51190800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr13:51186600-51191000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr13:51187000-51188400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr13:51187000-51190200	Weak transcription	Dnd41	blood
12	chr13:51187000-51190800	Weak transcription	Primary B cells from cord blood	blood
13	chr13:51187000-51191200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr13:51187000-51191400	Weak transcription	Thymus	Thymus
15	chr13:51187200-51188400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr13:51187200-51190800	Weak transcription	Primary B cells from peripheral blood	blood

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