Variant report

Variant	rs3905909
Chromosome Location	chr5:97992386-97992387
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10515277	1.00[AMR][1000 genomes]
rs17132943	0.83[AMR][1000 genomes]
rs17132960	0.83[AMR][1000 genomes]
rs17165383	0.83[AMR][1000 genomes]
rs17166102	1.00[AMR][1000 genomes]
rs17166181	0.83[AMR][1000 genomes]
rs17166186	0.83[AMR][1000 genomes]
rs3909492	1.00[AMR][1000 genomes]
rs6860595	0.83[AMR][1000 genomes]
rs6865012	0.83[AMR][1000 genomes]
rs6865922	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6881459	0.83[AMR][1000 genomes]
rs6891350	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6892978	0.83[AMR][1000 genomes]
rs6897970	0.83[AMR][1000 genomes]
rs7703206	0.83[AMR][1000 genomes]
rs7732224	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016611	chr5:97873846-98035559	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv537816	chr5:97873846-98035559	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1029509	chr5:97888644-98040172	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv882413	chr5:97918829-98022320	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv4929	chr5:97988331-98005486	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97991000-97995400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:97991200-97995600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:97991400-97993600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr5:97991400-97993600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:97991600-97993600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr5:97991800-97992800	Enhancers	Osteobl	bone
7	chr5:97991800-97993000	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr5:97991800-97993200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr5:97991800-97993600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr5:97992000-97992600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr5:97992000-97992800	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr5:97992000-97992800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:97992000-97992800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr5:97992000-97993200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:97992000-97993400	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr5:97992000-97993600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr5:97992000-97993600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr5:97992200-97993400	Weak transcription	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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