Variant report

Variant	rs3907829
Chromosome Location	chr5:98013291-98013292
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:98006117..98008420-chr5:98011449..98013351,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10038064	0.89[ASN][1000 genomes]
rs10038307	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10039819	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10043199	0.89[ASN][1000 genomes]
rs10045612	0.89[ASN][1000 genomes]
rs10059259	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10065249	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10068399	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10075691	0.83[ASN][1000 genomes]
rs10479181	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10479183	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10515282	0.94[ASN][1000 genomes]
rs11242242	0.83[ASN][1000 genomes]
rs11242255	0.83[ASN][1000 genomes]
rs11949924	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11950934	0.89[ASN][1000 genomes]
rs13361670	0.89[ASN][1000 genomes]
rs1421633	0.89[ASN][1000 genomes]
rs1421634	0.89[ASN][1000 genomes]
rs17166201	0.89[ASN][1000 genomes]
rs17661925	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2080994	0.83[ASN][1000 genomes]
rs2112145	0.89[ASN][1000 genomes]
rs3909494	0.83[ASN][1000 genomes]
rs4018045	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4277375	0.83[ASN][1000 genomes]
rs57871526	0.88[ASN][1000 genomes]
rs59126397	0.89[ASN][1000 genomes]
rs6883625	0.89[ASN][1000 genomes]
rs6895508	0.83[ASN][1000 genomes]
rs73149511	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7444475	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7728547	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7729850	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016611	chr5:97873846-98035559	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv537816	chr5:97873846-98035559	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1029509	chr5:97888644-98040172	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv882413	chr5:97918829-98022320	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98009000-98013800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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