Variant report

Variant	rs3909711
Chromosome Location	chr4:175372170-175372171
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10520283	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11943385	1.00[AMR][1000 genomes]
rs1365619	1.00[AMR][1000 genomes]
rs1365620	1.00[AMR][1000 genomes]
rs17052155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17052163	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17060520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1965052	1.00[AMR][1000 genomes]
rs2555662	1.00[AMR][1000 genomes]
rs2555663	1.00[AMR][1000 genomes]
rs2612647	1.00[AMR][1000 genomes]
rs2612652	1.00[AMR][1000 genomes]
rs3101252	1.00[AMR][1000 genomes]
rs45602831	1.00[AMR][1000 genomes]
rs7664204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175368800-175374800	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr4:175369200-175374800	Enhancers	Rectal Smooth Muscle	rectum
3	chr4:175369400-175373000	Enhancers	Stomach Mucosa	stomach
4	chr4:175369400-175373800	Enhancers	Colon Smooth Muscle	Colon
5	chr4:175370000-175373200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr4:175370000-175373600	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr4:175370600-175374200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr4:175370800-175373200	Enhancers	Hela-S3	cervix
9	chr4:175371000-175373800	Enhancers	A549	lung
10	chr4:175371000-175378400	Weak transcription	Esophagus	oesophagus
11	chr4:175371200-175372200	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr4:175371200-175373000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr4:175371400-175372400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr4:175371400-175372400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr4:175371400-175374200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr4:175371400-175374600	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr4:175371400-175374600	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr4:175371600-175372800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr4:175371600-175373000	Weak transcription	Fetal Stomach	stomach
20	chr4:175371800-175374600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr4:175371800-175382600	Weak transcription	Small Intestine	intestine
22	chr4:175372000-175372800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr4:175372000-175373200	Weak transcription	Fetal Intestine Large	intestine
24	chr4:175372000-175373200	Weak transcription	Fetal Intestine Small	intestine
25	chr4:175372000-175373800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr4:175372000-175377200	Weak transcription	Stomach Smooth Muscle	stomach

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