Variant report

Variant	rs3909851
Chromosome Location	chr5:151443825-151443826
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:151443718..151445789-chr5:151449556..151451745,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10075826	0.84[ASN][1000 genomes]
rs10515655	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10515656	0.86[ASN][1000 genomes]
rs11959433	0.84[ASN][1000 genomes]
rs154108	0.93[ASN][1000 genomes]
rs154109	0.81[ASN][1000 genomes]
rs154694	0.88[ASN][1000 genomes]
rs160036	0.88[ASN][1000 genomes]
rs160037	0.88[ASN][1000 genomes]
rs166197	0.86[ASN][1000 genomes]
rs17112702	0.93[ASN][1000 genomes]
rs17662569	0.92[ASN][1000 genomes]
rs17742249	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17742283	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17742331	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17742343	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17742422	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17742440	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs177439	0.87[ASN][1000 genomes]
rs17804556	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs185252	0.85[ASN][1000 genomes]
rs1896779	0.82[ASN][1000 genomes]
rs253723	0.93[ASN][1000 genomes]
rs253726	0.86[ASN][1000 genomes]
rs29849	0.87[ASN][1000 genomes]
rs29851	0.94[ASN][1000 genomes]
rs29855	0.86[ASN][1000 genomes]
rs29856	0.93[ASN][1000 genomes]
rs3852201	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3909854	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3909856	0.94[ASN][1000 genomes]
rs39806	0.86[ASN][1000 genomes]
rs440768	0.93[ASN][1000 genomes]
rs4958513	0.82[ASN][1000 genomes]
rs524656	0.84[ASN][1000 genomes]
rs58240603	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72802282	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72802285	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72802288	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020899	chr5:151412785-151516788	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv5071	chr5:151438330-151472013	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv508384	chr5:151438582-151487326	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs3909851	HMGXB3	cis	parietal	SCAN
rs3909851	NMUR2	cis	parietal	SCAN
rs3909851	FAM114A2	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151432600-151450000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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