Variant report

Variant	rs3911204
Chromosome Location	chr5:151530660-151530661
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11167571	0.94[ASN][1000 genomes]
rs12188765	0.94[ASN][1000 genomes]
rs12657451	0.92[ASN][1000 genomes]
rs13188666	0.94[ASN][1000 genomes]
rs154688	0.94[ASN][1000 genomes]
rs154689	0.94[ASN][1000 genomes]
rs17804712	0.94[ASN][1000 genomes]
rs294948	0.92[ASN][1000 genomes]
rs294950	0.92[ASN][1000 genomes]
rs294952	0.91[ASN][1000 genomes]
rs294956	0.91[ASN][1000 genomes]
rs294960	0.82[CHB][hapmap];0.90[CHD][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs294961	0.87[CHB][hapmap];0.83[MEX][hapmap]
rs294964	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4403170	0.94[ASN][1000 genomes]
rs59349033	0.96[ASN][1000 genomes]
rs6579919	0.94[ASN][1000 genomes]
rs68004240	0.96[ASN][1000 genomes]
rs71588037	0.93[ASN][1000 genomes]
rs71588038	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760935	chr5:151463117-151586051	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv883039	chr5:151471642-151540888	Enhancers Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv883040	chr5:151471642-151596273	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv883045	chr5:151514171-151540888	Enhancers Bivalent Enhancer Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv883046	chr5:151514956-151540888	Bivalent Enhancer Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv516251	chr5:151514956-151543128	Enhancers Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv883047	chr5:151516086-151540888	Weak transcription Enhancers Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151518600-151531200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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