Variant report

Variant	rs391161
Chromosome Location	chr13:64652948-64652949
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr13:64652790-64652990	HepG2	liver:	n/a	n/a
2	POLR2A	chr13:64652080-64653046	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:64651720..64653220-chr20:35806448..35807989,2	K562	blood:
2	chr13:64652193..64655150-chr13:64666356..64668232,2	K562	blood:

Variant related genes	Relation type
LINC00355	TF binding region
ENSG00000118705	Chromatin interaction
ENSG00000101353	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs183864	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs198980	0.85[AMR][1000 genomes]
rs269566	0.85[AMR][1000 genomes]
rs269567	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs269570	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs269571	0.85[AMR][1000 genomes]
rs269573	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs269576	0.85[AMR][1000 genomes]
rs269577	0.85[AMR][1000 genomes]
rs269579	0.87[AFR][1000 genomes]
rs269613	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs269615	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs269616	0.85[AMR][1000 genomes]
rs269617	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs269620	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs269622	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs269623	0.85[AMR][1000 genomes]
rs269624	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs269625	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs269628	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs269642	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs269644	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs269645	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs272280	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs377326	0.85[AMR][1000 genomes]
rs396677	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs415464	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs416898	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs428277	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900332	chr13:64411616-64856866	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv561964	chr13:64412839-64967458	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1044946	chr13:64419179-64937470	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1038291	chr13:64424127-64937470	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1047229	chr13:64424127-64962138	Enhancers Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1037078	chr13:64424251-64937470	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1036164	chr13:64425528-64933932	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv516171	chr13:64432922-64936243	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv455914	chr13:64432922-65368490	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv561965	chr13:64432922-65368490	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv1041541	chr13:64446654-64913526	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv541807	chr13:64446654-64913526	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv994983	chr13:64446655-64913525	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv916348	chr13:64446759-64913520	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv455915	chr13:64455165-64933618	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv561966	chr13:64455165-64933618	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
17	esv2763030	chr13:64545539-64719372	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
18	nsv832634	chr13:64583792-64737416	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
19	nsv430577	chr13:64602899-65034099	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
20	esv2754234	chr13:64637596-64901664	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
21	nsv561967	chr13:64637651-64751527	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
22	esv2754533	chr13:64641096-64655359	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
23	nsv900337	chr13:64643485-64856866	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:64648200-64654200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr13:64651000-64653400	Active TSS	HepG2	liver
3	chr13:64652600-64653200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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