The 2.0 version of rSNPBase

Variant report

Variant rs3911800
Chromosome Location chr12:11325797-11325798
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:94 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:11322200-11326000 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
2 chr12:11322400-11325800 Active TSS K562 blood
3 chr12:11322800-11325800 Active TSS GM12878-XiMat blood
4 chr12:11322800-11326200 Active TSS HUES6 Cell Line embryonic stem cell
5 chr12:11323400-11325800 Active TSS HUES48 Cell Line embryonic stem cell
6 chr12:11323400-11325800 Active TSS HMEC breast
7 chr12:11323400-11326000 Active TSS hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
8 chr12:11323400-11326000 Active TSS Muscle Satellite Cultured Cells --
9 chr12:11323400-11326000 Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
10 chr12:11323600-11326200 Active TSS Ovary ovary
11 chr12:11324200-11326000 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
12 chr12:11324200-11326200 Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
13 chr12:11324600-11326000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
14 chr12:11324800-11326600 Weak transcription Esophagus oesophagus
15 chr12:11325000-11325800 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
16 chr12:11325000-11326000 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
17 chr12:11325000-11326200 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
18 chr12:11325000-11335600 Weak transcription Left Ventricle heart
19 chr12:11325200-11325800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
20 chr12:11325200-11326000 Enhancers Primary T helper naive cells fromperipheralblood blood
21 chr12:11325200-11326000 Enhancers Primary T helper cells fromperipheralblood blood
22 chr12:11325200-11326000 Enhancers Primary T killer naive cells fromperipheralblood blood
23 chr12:11325200-11326000 Enhancers Primary T killer memory cells from peripheral blood blood
24 chr12:11325200-11326000 Enhancers Colon Smooth Muscle Colon
25 chr12:11325200-11326200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
26 chr12:11325200-11326200 Enhancers Adipose Nuclei Adipose
27 chr12:11325200-11326200 Weak transcription Brain Cingulate Gyrus brain
28 chr12:11325200-11326400 Enhancers Fetal Heart heart
29 chr12:11325200-11327000 Enhancers Brain Substantia Nigra brain
30 chr12:11325200-11327800 Weak transcription Stomach Smooth Muscle stomach
31 chr12:11325200-11328400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
32 chr12:11325200-11328600 Weak transcription Thymus Thymus
33 chr12:11325200-11330000 Weak transcription Primary T cells fromperipheralblood blood
34 chr12:11325200-11330400 Weak transcription Skeletal Muscle Female skeletal muscle
35 chr12:11325200-11332200 Weak transcription Fetal Muscle Leg muscle
36 chr12:11325200-11332200 Weak transcription Sigmoid Colon Sigmoid Colon
37 chr12:11325400-11325800 Enhancers Primary T cells from cord blood blood
38 chr12:11325400-11325800 Enhancers Primary T helper cells PMA-I stimulated --
39 chr12:11325400-11325800 Flanking Active TSS A549 lung
40 chr12:11325400-11326000 Flanking Active TSS H9 Derived Neuron Cultured Cells ES cell derived
41 chr12:11325400-11326000 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
42 chr12:11325400-11326000 Enhancers Primary hematopoietic stem cells blood
43 chr12:11325400-11326000 Enhancers Primary T helper naive cells from peripheral blood blood
44 chr12:11325400-11326000 Enhancers Cortex derived primary cultured neurospheres brain
45 chr12:11325400-11326000 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
46 chr12:11325400-11326000 Enhancers Brain Anterior Caudate brain
47 chr12:11325400-11326000 Enhancers Brain Inferior Temporal Lobe brain
48 chr12:11325400-11326000 Enhancers Duodenum Smooth Muscle Duodenum
49 chr12:11325400-11326000 Enhancers Hela-S3 cervix
50 chr12:11325400-11326000 Transcr. at gene 5' and 3' HSMM muscle

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Last update: Aug 31, 2015