Variant report

Variant	rs3912100
Chromosome Location	chr3:162155787-162155788
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10084695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1026691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1026693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10460867	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10936280	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10936281	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10936282	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10936283	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11712285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11927487	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12696149	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1382204	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1471415	0.85[AMR][1000 genomes]
rs1478145	0.85[AMR][1000 genomes]
rs1478147	0.85[AMR][1000 genomes]
rs2199604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2318455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2405505	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2405506	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2405740	0.94[AMR][1000 genomes]
rs2405750	0.97[AMR][1000 genomes]
rs2405753	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2405754	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28567923	0.85[AMR][1000 genomes]
rs28667121	0.85[AMR][1000 genomes]
rs2897152	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3853161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3853162	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3863256	0.85[AMR][1000 genomes]
rs3907216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4263305	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4296607	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4296608	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4296609	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4449332	1.00[AMR][1000 genomes]
rs4482675	0.94[AMR][1000 genomes]
rs4621344	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4856629	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4856630	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4856631	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4856632	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4856633	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4856682	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6441452	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6441454	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6441459	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6441460	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6441461	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6441462	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6441463	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6764843	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6765996	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6766883	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6766973	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6770434	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6775708	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6776864	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6776986	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6777189	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6789202	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6791605	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6795724	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6796376	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6798305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6799150	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6801086	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6801492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6801686	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7633312	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7648533	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9290119	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9813453	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9813595	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9813898	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9817021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9819929	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9828808	0.84[EUR][1000 genomes]
rs9868667	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9869267	0.94[AMR][1000 genomes]
rs9875471	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9879717	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs993391	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs993392	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:30 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877721	chr3:161878713-162303276	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1006802	chr3:161921063-162599175	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv877724	chr3:162022959-162198135	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv877725	chr3:162036879-162216666	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1002279	chr3:162061779-162156743	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv877727	chr3:162085820-162198135	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv877728	chr3:162085820-162236885	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv877731	chr3:162096395-162198135	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv592159	chr3:162113116-162177290	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv877732	chr3:162113116-162236885	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv3353782	chr3:162121299-162171260	Active TSS Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv877733	chr3:162123179-162159287	Active TSS Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv877734	chr3:162123179-162188625	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv516841	chr3:162123179-162203013	Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv877735	chr3:162123179-162380954	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv592173	chr3:162130691-162159287	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv592174	chr3:162130691-162177290	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv592175	chr3:162130691-162226534	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv460931	chr3:162130691-162227870	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	nsv592176	chr3:162130691-162227870	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv460932	chr3:162130691-162238239	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv592177	chr3:162130691-162238239	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
23	nsv592178	chr3:162130691-162251934	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
24	nsv877736	chr3:162131408-162227870	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
25	nsv592182	chr3:162131408-162238239	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
26	esv2830129	chr3:162132155-162159287	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
27	nsv877737	chr3:162132155-162242541	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
28	nsv592189	chr3:162133075-162226117	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
29	nsv877738	chr3:162138826-162236885	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
30	nsv428424	chr3:162145988-163033943	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:162155200-162157200	ZNF genes & repeats	Dnd41	blood
2	chr3:162155600-162156000	Enhancers	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links