Variant report

Variant	rs3917368
Chromosome Location	chr2:113582782-113582783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:113580846..113583724-chr2:113602523..113605120,2	MCF-7	breast:
2	chr2:113573836..113575663-chr2:113580484..113583090,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1143633	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1143643	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3181067	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs3917368	DPP10	cis	parietal	SCAN
rs3917368	IL1B	cis	lymphoblastoid	seeQTL

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113580000-113586800	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr2:113581000-113583600	Enhancers	Liver	Liver
3	chr2:113581400-113583600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr2:113581400-113583600	Enhancers	HMEC	breast
5	chr2:113581600-113582800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr2:113581600-113582800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr2:113581600-113582800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:113581600-113582800	Enhancers	Gastric	stomach
9	chr2:113581600-113583000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr2:113581600-113583000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr2:113581600-113583000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr2:113581600-113583000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr2:113581600-113583000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr2:113581600-113583000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr2:113581600-113583000	Enhancers	Pancreas	Pancrea
16	chr2:113581600-113583000	Enhancers	Small Intestine	intestine
17	chr2:113581600-113583000	Enhancers	GM12878-XiMat	blood
18	chr2:113581600-113583000	Enhancers	NHEK	skin
19	chr2:113581600-113583000	Enhancers	Osteobl	bone
20	chr2:113581600-113583600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr2:113581600-113583600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr2:113581600-113584000	Enhancers	Hela-S3	cervix
23	chr2:113582000-113583200	Enhancers	Right Atrium	heart
24	chr2:113582200-113588800	Weak transcription	Lung	lung
25	chr2:113582400-113586400	Weak transcription	Primary hematopoietic stem cells	blood
26	chr2:113582400-113592000	Weak transcription	NH-A	brain
27	chr2:113582600-113582800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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