Variant report

Variant	rs3918368
Chromosome Location	chr3:46403240-46403241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10510750	0.82[EUR][1000 genomes]
rs11575062	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11919884	0.84[EUR][1000 genomes]
rs13065351	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13068145	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13068271	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13071469	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13073976	0.85[EUR][1000 genomes]
rs13077302	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13078564	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13080757	0.85[EUR][1000 genomes]
rs13093063	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13100243	0.90[EUR][1000 genomes]
rs17141079	0.83[ASN][1000 genomes]
rs17217831	0.88[EUR][1000 genomes]
rs17283712	0.88[EUR][1000 genomes]
rs17284138	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17284187	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17715106	0.83[ASN][1000 genomes]
rs17765882	0.83[ASN][1000 genomes]
rs1894387	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1894388	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2856762	0.83[ASN][1000 genomes]
rs28677778	0.90[EUR][1000 genomes]
rs3091310	0.88[EUR][1000 genomes]
rs3092957	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3092958	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3092959	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3181038	0.83[ASN][1000 genomes]
rs34024447	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34041956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34073838	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34079287	0.88[EUR][1000 genomes]
rs34106161	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34158148	0.83[ASN][1000 genomes]
rs34180919	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34190223	0.83[ASN][1000 genomes]
rs34272024	0.80[EUR][1000 genomes]
rs34351442	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34363105	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34406035	0.85[EUR][1000 genomes]
rs34448949	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34455547	0.83[ASN][1000 genomes]
rs34473395	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34578126	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34709208	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34883716	0.83[ASN][1000 genomes]
rs34953706	0.83[ASN][1000 genomes]
rs34988015	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35035328	0.83[EUR][1000 genomes]
rs35117954	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35148665	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35203745	0.90[EUR][1000 genomes]
rs35218998	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35260614	0.83[ASN][1000 genomes]
rs35367413	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35373513	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35413141	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35438577	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35479331	0.83[ASN][1000 genomes]
rs35511592	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35513549	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35516519	0.83[ASN][1000 genomes]
rs35577626	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35601704	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35646896	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35821444	0.83[ASN][1000 genomes]
rs35943069	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36048333	0.85[EUR][1000 genomes]
rs36052732	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36078103	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3749461	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3918354	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3918362	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3918365	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4473594	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4987053	0.86[EUR][1000 genomes]
rs6777875	0.83[ASN][1000 genomes]
rs6793370	0.90[EUR][1000 genomes]
rs71327047	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs71327048	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71327052	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71327053	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71327054	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71327055	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71327056	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71327057	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71327059	0.83[ASN][1000 genomes]
rs71327061	0.83[ASN][1000 genomes]
rs71615445	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71622511	0.86[EUR][1000 genomes]
rs7649905	0.90[EUR][1000 genomes]
rs9810242	0.90[EUR][1000 genomes]
rs9872023	0.91[EUR][1000 genomes]
rs9882616	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv3323840	chr3:46352348-46497196	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3389382	chr3:46352798-46496696	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46395800-46404200	Weak transcription	Right Atrium	heart
2	chr3:46396000-46422000	Weak transcription	Lung	lung
3	chr3:46398000-46404200	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr3:46399400-46404000	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr3:46400200-46404200	Enhancers	Primary T cells fromperipheralblood	blood
6	chr3:46400400-46404200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:46400400-46404400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr3:46400600-46404000	Enhancers	Primary B cells from cord blood	blood
9	chr3:46400800-46403400	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr3:46400800-46403800	Enhancers	Primary hematopoietic stem cells	blood
11	chr3:46401000-46403400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr3:46401000-46403800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
13	chr3:46401000-46404000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:46401000-46404000	Enhancers	Fetal Thymus	thymus
15	chr3:46401000-46404200	Enhancers	Primary B cells from peripheral blood	blood
16	chr3:46401000-46404400	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr3:46401000-46404600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr3:46401200-46403600	Enhancers	Brain Substantia Nigra	brain
19	chr3:46401600-46403400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:46401600-46403800	Enhancers	Duodenum Mucosa	Duodenum
21	chr3:46401800-46403400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr3:46402000-46403400	Enhancers	Placenta	Placenta
23	chr3:46402000-46403600	Weak transcription	Fetal Intestine Large	intestine
24	chr3:46402000-46403800	Enhancers	Brain Cingulate Gyrus	brain
25	chr3:46402200-46403400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr3:46402200-46404400	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr3:46402200-46404400	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr3:46402400-46403600	Enhancers	Hela-S3	cervix
29	chr3:46402400-46405400	Enhancers	GM12878-XiMat	blood
30	chr3:46402600-46403600	Enhancers	Placenta Amnion	Placenta Amnion
31	chr3:46402600-46404400	Enhancers	Spleen	Spleen
32	chr3:46402800-46403600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr3:46402800-46404000	Weak transcription	Small Intestine	intestine
34	chr3:46402800-46404000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
35	chr3:46402800-46404200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr3:46402800-46404400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr3:46403000-46404400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
38	chr3:46403000-46404400	Enhancers	Rectal Mucosa Donor 29	rectum
39	chr3:46403000-46408000	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr3:46403200-46403800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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