Variant report

Variant	rs3923088
Chromosome Location	chr10:25815417-25815418
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25812990..25815921-chr10:25816026..25818723,2	K562	blood:
2	chr10:25814198..25816467-chr10:25817309..25819752,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10047266	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10508699	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10741093	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10764556	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10828810	0.91[JPT][hapmap]
rs10828815	0.84[JPT][hapmap]
rs10828816	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10828817	0.99[ASN][1000 genomes]
rs11014580	0.80[JPT][hapmap]
rs11014581	0.87[JPT][hapmap]
rs11014595	0.99[ASN][1000 genomes]
rs12221280	0.85[JPT][hapmap]
rs1329252	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1335208	0.96[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1335209	0.96[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1536836	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs1536837	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs1887925	0.91[JPT][hapmap]
rs1932148	0.85[JPT][hapmap]
rs1932149	0.83[JPT][hapmap]
rs1932150	0.87[JPT][hapmap]
rs2184518	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4459183	0.84[JPT][hapmap]
rs4474349	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4623781	0.83[JPT][hapmap]
rs4747524	0.80[JPT][hapmap]
rs4749043	0.84[JPT][hapmap]
rs5001528	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6482488	0.89[CEU][hapmap];0.80[JPT][hapmap];0.86[EUR][1000 genomes]
rs6482489	0.83[EUR][1000 genomes]
rs6482490	0.95[ASN][1000 genomes]
rs7077800	0.96[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7080715	0.95[ASN][1000 genomes]
rs7080997	0.95[ASN][1000 genomes]
rs7082952	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs7084736	0.99[ASN][1000 genomes]
rs7086249	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7096556	0.95[ASN][1000 genomes]
rs7097106	0.95[ASN][1000 genomes]
rs7097224	0.87[ASN][1000 genomes]
rs7097392	0.95[ASN][1000 genomes]
rs7100942	0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7478285	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs943985	0.80[JPT][hapmap]
rs952600	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs962696	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25812800-25824200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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