Variant report

Variant	rs392598
Chromosome Location	chr5:135754926-135754927
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs173206	0.94[ASN][1000 genomes]
rs193218	0.93[ASN][1000 genomes]
rs346628	0.96[ASN][1000 genomes]
rs346629	0.96[ASN][1000 genomes]
rs346633	0.96[ASN][1000 genomes]
rs346634	0.96[ASN][1000 genomes]
rs346636	0.96[ASN][1000 genomes]
rs346638	0.96[ASN][1000 genomes]
rs346639	0.96[ASN][1000 genomes]
rs346642	0.96[ASN][1000 genomes]
rs346643	0.93[ASN][1000 genomes]
rs346649	0.94[ASN][1000 genomes]
rs346655	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1792427	chr5:135744555-135755386	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:135753400-135756800	Enhancers	Fetal Kidney	kidney
2	chr5:135754000-135756800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:135754400-135756200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr5:135754600-135755200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:135754600-135756000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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