Variant report

Variant	rs3934693
Chromosome Location	chr11:70901529-70901530
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:70900199..70902924-chr11:70913293..70915291,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11232452	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11232477	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11232508	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11232576	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11232591	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs11822742	1.00[EUR][1000 genomes]
rs11826649	1.00[EUR][1000 genomes]
rs4072326	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4943820	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4943871	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55656100	0.82[EUR][1000 genomes]
rs55690281	1.00[EUR][1000 genomes]
rs55712817	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55788978	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55836628	0.82[EUR][1000 genomes]
rs55897315	1.00[EUR][1000 genomes]
rs55928066	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56162839	1.00[EUR][1000 genomes]
rs56220831	0.82[EUR][1000 genomes]
rs56255416	1.00[EUR][1000 genomes]
rs56368604	1.00[EUR][1000 genomes]
rs57007124	1.00[EUR][1000 genomes]
rs58661988	0.82[EUR][1000 genomes]
rs58984468	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59417145	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59894456	1.00[EUR][1000 genomes]
rs61037105	1.00[EUR][1000 genomes]
rs73521132	0.82[EUR][1000 genomes]
rs73521141	0.82[EUR][1000 genomes]
rs7944885	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70891200-70903600	Weak transcription	Duodenum Mucosa	Duodenum
2	chr11:70891800-70908400	Weak transcription	A549	lung
3	chr11:70892000-70901600	Weak transcription	Liver	Liver
4	chr11:70892000-70913000	Weak transcription	Stomach Mucosa	stomach
5	chr11:70892600-70905800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr11:70892800-70915400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:70893200-70915400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr11:70895800-70917000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr11:70896800-70904200	Strong transcription	HepG2	liver
10	chr11:70898800-70903000	Strong transcription	Fetal Intestine Small	intestine
11	chr11:70899200-70905600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr11:70899200-70910400	Weak transcription	Fetal Kidney	kidney
13	chr11:70899800-70917200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr11:70900800-70902000	Genic enhancers	Pancreas	Pancrea
15	chr11:70900800-70902200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr11:70900800-70902200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:70901000-70901800	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr11:70901000-70901800	Enhancers	Spleen	Spleen
19	chr11:70901000-70902000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr11:70901200-70901600	Weak transcription	Fetal Stomach	stomach
21	chr11:70901200-70902600	Strong transcription	Gastric	stomach
22	chr11:70901400-70901600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr11:70901400-70901800	Strong transcription	Fetal Intestine Large	intestine
24	chr11:70901400-70902400	Strong transcription	iPS-15b Cell Line	embryonic stem cell
25	chr11:70901400-70902600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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