The 2.0 version of rSNPBase

Variant report

Variant rs3935068
Chromosome Location chr11:57078721-57078722
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:57067400-57079000 Weak transcription Primary B cells from cord blood blood
2 chr11:57068400-57081600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr11:57074400-57081800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
4 chr11:57075000-57080600 Genic enhancers Spleen Spleen
5 chr11:57076000-57078800 Flanking Active TSS Skeletal Muscle Female skeletal muscle
6 chr11:57076200-57080600 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin01 Skin
7 chr11:57077600-57082200 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin02 Skin
8 chr11:57077800-57078800 Flanking Active TSS Duodenum Smooth Muscle Duodenum
9 chr11:57077800-57078800 Transcr. at gene 5' and 3' Stomach Mucosa stomach
10 chr11:57077800-57079200 Enhancers Placenta Amnion Placenta Amnion
11 chr11:57077800-57079600 Transcr. at gene 5' and 3' Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
12 chr11:57077800-57080000 Genic enhancers Brain Substantia Nigra brain
13 chr11:57077800-57080000 Transcr. at gene 5' and 3' Fetal Intestine Small intestine
14 chr11:57078000-57078800 Genic enhancers Ganglion Eminence derived primary cultured neurospheres brain
15 chr11:57078000-57078800 Flanking Active TSS Rectal Smooth Muscle rectum
16 chr11:57078000-57079000 Flanking Active TSS Adipose Nuclei Adipose
17 chr11:57078000-57079000 Flanking Active TSS Pancreas Pancrea
18 chr11:57078000-57079200 Active TSS Psoas Muscle Psoas
19 chr11:57078000-57079400 Transcr. at gene 5' and 3' hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
20 chr11:57078000-57079600 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin03 Skin
21 chr11:57078000-57079800 Enhancers Fetal Heart heart
22 chr11:57078000-57080000 Genic enhancers Brain Cingulate Gyrus brain
23 chr11:57078000-57080600 Genic enhancers Cortex derived primary cultured neurospheres brain
24 chr11:57078200-57078800 Enhancers Primary T cells fromperipheralblood blood
25 chr11:57078200-57078800 Flanking Active TSS HepG2 liver
26 chr11:57078200-57079000 Transcr. at gene 5' and 3' Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
27 chr11:57078200-57079200 Transcr. at gene 5' and 3' Fetal Stomach stomach
28 chr11:57078200-57079400 Enhancers Primary monocytes fromperipheralblood blood
29 chr11:57078200-57079400 Flanking Active TSS Fetal Adrenal Gland Adrenal Gland
30 chr11:57078200-57079400 Flanking Active TSS Fetal Muscle Leg muscle
31 chr11:57078200-57079400 Flanking Active TSS Placenta Placenta
32 chr11:57078200-57079600 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
33 chr11:57078200-57079600 Flanking Active TSS Colonic Mucosa Colon
34 chr11:57078200-57079600 Enhancers Fetal Brain Male brain
35 chr11:57078200-57079600 Flanking Active TSS Stomach Smooth Muscle stomach
36 chr11:57078400-57078800 Flanking Active TSS HUES6 Cell Line embryonic stem cell
37 chr11:57078400-57078800 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr11:57078400-57078800 Genic enhancers Foreskin Melanocyte Primary Cells skin03 Skin
39 chr11:57078400-57078800 Flanking Active TSS Left Ventricle heart
40 chr11:57078400-57078800 Flanking Active TSS Right Ventricle heart
41 chr11:57078400-57078800 Enhancers GM12878-XiMat blood
42 chr11:57078400-57079000 Transcr. at gene 5' and 3' H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
43 chr11:57078400-57079000 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
44 chr11:57078400-57079000 Active TSS Aorta Aorta
45 chr11:57078400-57079000 Flanking Active TSS Brain Hippocampus Middle brain
46 chr11:57078400-57079000 Active TSS Esophagus oesophagus
47 chr11:57078400-57079000 Flanking Active TSS Rectal Mucosa Donor 29 rectum
48 chr11:57078400-57079000 Flanking Active TSS Rectal Mucosa Donor 31 rectum
49 chr11:57078400-57079000 Transcr. at gene 5' and 3' Right Atrium heart
50 chr11:57078400-57079000 Flanking Active TSS Skeletal Muscle Male skeletal muscle

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Last update: Aug 31, 2015