Variant report

Variant	rs395848
Chromosome Location	chr7:101792163-101792164
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101458108..101460956-chr7:101791516..101794239,3	MCF-7	breast:
2	chr7:101792126..101793850-chr7:101795352..101798299,2	MCF-7	breast:
3	chr7:101791487..101793920-chr7:101795283..101798105,2	K562	blood:

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs16869536	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs201435	1.00[JPT][hapmap]
rs201436	1.00[JPT][hapmap]
rs201441	1.00[JPT][hapmap]
rs201442	1.00[JPT][hapmap]
rs201443	1.00[JPT][hapmap]
rs201445	1.00[JPT][hapmap]
rs201448	1.00[JPT][hapmap]
rs201449	1.00[JPT][hapmap]
rs201450	1.00[JPT][hapmap]
rs201454	1.00[JPT][hapmap]
rs201455	1.00[JPT][hapmap]
rs201456	1.00[JPT][hapmap]
rs201458	1.00[JPT][hapmap]
rs201459	1.00[JPT][hapmap]
rs201468	1.00[JPT][hapmap]
rs28688706	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs382270	1.00[JPT][hapmap]
rs382934	1.00[JPT][hapmap]
rs386207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs396162	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs409419	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs440373	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6976246	1.00[JPT][hapmap]
rs7788329	1.00[JPT][hapmap]
rs7800374	1.00[JPT][hapmap]

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101760200-101796000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr7:101760400-101795800	Weak transcription	Left Ventricle	heart
3	chr7:101761000-101795600	Weak transcription	Colon Smooth Muscle	Colon
4	chr7:101765200-101801200	Weak transcription	Pancreas	Pancrea
5	chr7:101765600-101801000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr7:101766000-101796000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:101766000-101796000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr7:101766000-101796000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr7:101766200-101793800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr7:101766200-101796000	Weak transcription	Esophagus	oesophagus
11	chr7:101766200-101796600	Weak transcription	Brain Germinal Matrix	brain
12	chr7:101768000-101793800	Weak transcription	K562	blood
13	chr7:101768800-101793800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr7:101768800-101795200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr7:101769000-101792400	Weak transcription	Gastric	stomach
16	chr7:101769000-101795000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr7:101769000-101795400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr7:101769000-101795800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr7:101769000-101795800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr7:101771200-101795400	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr7:101771400-101796600	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr7:101772000-101795200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr7:101772000-101796800	Weak transcription	Liver	Liver
24	chr7:101772000-101801600	Weak transcription	Duodenum Mucosa	Duodenum
25	chr7:101773400-101795400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr7:101773600-101792800	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr7:101773600-101795200	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr7:101773600-101795800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr7:101773600-101801200	Weak transcription	Aorta	Aorta
30	chr7:101773800-101796000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr7:101774200-101801200	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr7:101777400-101812800	Weak transcription	Fetal Lung	lung
33	chr7:101777600-101795200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr7:101777800-101796600	Weak transcription	NHLF	lung
35	chr7:101778000-101793600	Weak transcription	NHEK	skin
36	chr7:101778200-101796600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr7:101778400-101796000	Weak transcription	NH-A	brain
38	chr7:101778400-101812000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr7:101778600-101793000	Weak transcription	Hela-S3	cervix
40	chr7:101778600-101794400	Weak transcription	HepG2	liver
41	chr7:101778600-101795800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr7:101778800-101795200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr7:101779200-101796000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr7:101780400-101795800	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr7:101782000-101797600	Weak transcription	Fetal Brain Female	brain
46	chr7:101782200-101792800	Weak transcription	A549	lung
47	chr7:101782800-101803400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr7:101784400-101796600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr7:101784800-101795800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr7:101784800-101796200	Weak transcription	Primary T helper cells fromperipheralblood	blood

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