Variant report
| Variant | rs3968056 |
|---|---|
| Chromosome Location | chr3:119282238-119282239 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
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| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| CD80 | TF binding region |
| ENSG00000121594 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs56659708 | 1.00[AMR][1000 genomes] |
| rs61324063 | 1.00[AMR][1000 genomes] |
| rs61744178 | 1.00[AMR][1000 genomes] |
| rs61744411 | 1.00[AMR][1000 genomes] |
| rs61747387 | 1.00[AMR][1000 genomes] |
| rs6766961 | 1.00[AMR][1000 genomes] |
| rs6772192 | 1.00[AMR][1000 genomes] |
| rs6781905 | 1.00[AMR][1000 genomes] |
| rs6782742 | 1.00[AMR][1000 genomes] |
| rs72966441 | 1.00[AMR][1000 genomes] |
| rs72966442 | 1.00[AMR][1000 genomes] |
| rs72968480 | 1.00[AMR][1000 genomes] |
| rs72968490 | 1.00[AMR][1000 genomes] |
| rs72968497 | 1.00[AMR][1000 genomes] |
| rs72968499 | 1.00[AMR][1000 genomes] |
| rs72970303 | 1.00[AMR][1000 genomes] |
| rs72970308 | 1.00[AMR][1000 genomes] |
| rs72970314 | 1.00[AMR][1000 genomes] |
| rs72970322 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3487859 | chr3:118570588-119419623 | Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 61 gene(s) | inside rSNPs | diseases |
| 2 | esv3487860 | chr3:118570588-119419623 | Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 61 gene(s) | inside rSNPs | diseases |
| 3 | nsv829695 | chr3:119178890-119367996 | Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 44 gene(s) | inside rSNPs | diseases |
| 4 | esv1831824 | chr3:119263607-119402474 | Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 5 | nsv523837 | chr3:119278848-119288848 | Enhancers Flanking Active TSS Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:119267600-119298000 | Weak transcription | Fetal Lung | lung |
| 2 | chr3:119279200-119287400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
