Variant report

Variant	rs397705067
Chromosome Location	chr11:47762161-47762162
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:47755812..47757331-chr11:47760364..47762579,2	K562	blood:
2	chr11:47760881..47762523-chr11:47771591..47773857,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469858	chr11:47647515-47837172	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv1052397	chr11:47675470-48594256	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
3	nsv832143	chr11:47700808-47883540	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
4	esv3327776	chr11:47760726-47764324	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3469419	chr11:47761757-47763356	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3504510	chr11:47761762-47764502	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3504512	chr11:47761775-47763323	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3469430	chr11:47761783-47763326	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3469441	chr11:47761783-47763326	Strong transcription Genic enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv3504511	chr11:47761800-47763292	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3504513	chr11:47761800-47763292	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv1071939	chr11:47762160-47762161	Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47737000-47786200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr11:47737200-47779800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:47737600-47779200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:47737800-47767400	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr11:47737800-47776400	Strong transcription	Primary T helper cells PMA-I stimulated	--
6	chr11:47737800-47776600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
7	chr11:47737800-47776600	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr11:47737800-47777200	Strong transcription	NH-A	brain
9	chr11:47737800-47782800	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr11:47737800-47785800	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr11:47737800-47786000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:47737800-47786200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr11:47737800-47786200	Strong transcription	Muscle Satellite Cultured Cells	--
14	chr11:47737800-47786400	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr11:47737800-47786400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr11:47737800-47786400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr11:47737800-47786400	Strong transcription	Fetal Thymus	thymus
18	chr11:47737800-47786800	Strong transcription	Placenta	Placenta
19	chr11:47738000-47763800	Strong transcription	NHDF-Ad	bronchial
20	chr11:47738000-47776200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr11:47738000-47776200	Strong transcription	Skeletal Muscle Female	skeletal muscle
22	chr11:47738000-47776400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr11:47738000-47776600	Strong transcription	H1 Cell Line	embryonic stem cell
24	chr11:47738000-47786200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr11:47738000-47786400	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr11:47738000-47786400	Strong transcription	Primary B cells from peripheral blood	blood
27	chr11:47738000-47786800	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr11:47738200-47776200	Strong transcription	Fetal Muscle Trunk	muscle
29	chr11:47738200-47776600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr11:47738200-47779000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr11:47738200-47786400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr11:47738400-47776600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr11:47738400-47786200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr11:47738600-47785800	Strong transcription	Dnd41	blood
35	chr11:47739800-47776800	Strong transcription	Thymus	Thymus
36	chr11:47742800-47776400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr11:47742800-47776400	Strong transcription	Stomach Smooth Muscle	stomach
38	chr11:47743000-47776400	Strong transcription	Skeletal Muscle Male	skeletal muscle
39	chr11:47743800-47776200	Strong transcription	Primary T cells from cord blood	blood
40	chr11:47746000-47777600	Strong transcription	Fetal Muscle Leg	muscle
41	chr11:47746200-47776200	Strong transcription	Sigmoid Colon	Sigmoid Colon
42	chr11:47746200-47776400	Strong transcription	Duodenum Mucosa	Duodenum
43	chr11:47746200-47776800	Strong transcription	Left Ventricle	heart
44	chr11:47746200-47778200	Strong transcription	Osteobl	bone
45	chr11:47746200-47786000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr11:47746400-47765000	Weak transcription	Stomach Mucosa	stomach
47	chr11:47746400-47786200	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr11:47746800-47776000	Strong transcription	Hela-S3	cervix
49	chr11:47747400-47786200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr11:47747600-47786400	Strong transcription	Fetal Intestine Large	intestine

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