Variant report

Variant	rs398043334
Chromosome Location	chr15:56190852-56190853
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:56189708..56191637-chr15:56192609..56194993,2	K562	blood:
2	chr15:56189431..56191033-chr15:56283600..56285774,2	MCF-7	breast:
3	chr15:56190390..56193219-chr15:56284965..56287438,2	MCF-7	breast:
4	chr15:56189708..56191734-chr15:56192609..56195384,4	K562	blood:

Variant related genes	Relation type
ENSG00000069869	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	esv2761966	chr15:56167250-56192861	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3361699	chr15:56173709-56192307	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv569542	chr15:56185262-56210929	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv3362998	chr15:56190542-56191008	Enhancers Weak transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	esv1156280	chr15:56190851-56190852	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56176000-56216200	Weak transcription	Fetal Intestine Small	intestine
2	chr15:56188400-56207800	Weak transcription	Primary T cells from cord blood	blood
3	chr15:56188600-56218400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr15:56190000-56220000	Weak transcription	Pancreas	Pancrea
5	chr15:56190200-56191800	Weak transcription	Right Atrium	heart
6	chr15:56190200-56192400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr15:56190200-56192800	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr15:56190200-56195400	Weak transcription	NHLF	lung
9	chr15:56190200-56195800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr15:56190200-56199400	Weak transcription	HSMMtube	muscle
11	chr15:56190200-56201800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr15:56190200-56221200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr15:56190400-56191800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr15:56190400-56194400	Weak transcription	NH-A	brain
15	chr15:56190400-56195400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr15:56190400-56196600	Weak transcription	HMEC	breast
17	chr15:56190400-56199200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr15:56190400-56199200	Weak transcription	NHDF-Ad	bronchial
19	chr15:56190400-56199600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr15:56190400-56219800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr15:56190600-56192200	Enhancers	A549	lung
22	chr15:56190600-56193600	Weak transcription	HSMM	muscle
23	chr15:56190600-56195000	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr15:56190600-56195000	Weak transcription	Osteobl	bone
25	chr15:56190800-56191800	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr15:56190800-56192600	Enhancers	Psoas Muscle	Psoas
27	chr15:56190800-56196600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr15:56190800-56196600	Weak transcription	NHEK	skin
29	chr15:56190800-56199400	Weak transcription	Hela-S3	cervix

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