Variant report

Variant	rs398178
Chromosome Location	chr9:15628314-15628315
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 147 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:129)

rs_ID	r²[population]
rs10116904	1.00[ASN][1000 genomes]
rs10117524	1.00[ASN][1000 genomes]
rs10118595	1.00[ASN][1000 genomes]
rs10118675	1.00[ASN][1000 genomes]
rs10119257	1.00[ASN][1000 genomes]
rs10119931	1.00[ASN][1000 genomes]
rs10119980	0.94[EUR][1000 genomes]
rs10120171	1.00[ASN][1000 genomes]
rs10121012	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10121391	0.93[EUR][1000 genomes]
rs10121911	1.00[ASN][1000 genomes]
rs10121971	1.00[ASN][1000 genomes]
rs10123084	1.00[ASN][1000 genomes]
rs10124718	1.00[ASN][1000 genomes]
rs10124746	1.00[ASN][1000 genomes]
rs10217374	0.90[EUR][1000 genomes]
rs1039812	0.87[EUR][1000 genomes]
rs1039816	0.84[EUR][1000 genomes]
rs1041529	1.00[ASN][1000 genomes]
rs10733296	0.87[EUR][1000 genomes]
rs10738407	0.90[EUR][1000 genomes]
rs10756706	0.81[EUR][1000 genomes]
rs10962054	1.00[ASN][1000 genomes]
rs10962061	1.00[ASN][1000 genomes]
rs12336383	1.00[ASN][1000 genomes]
rs12336445	1.00[ASN][1000 genomes]
rs12337310	1.00[ASN][1000 genomes]
rs12344963	1.00[ASN][1000 genomes]
rs12348561	1.00[ASN][1000 genomes]
rs12348564	1.00[ASN][1000 genomes]
rs12348780	1.00[ASN][1000 genomes]
rs12350062	1.00[ASN][1000 genomes]
rs12350267	0.87[EUR][1000 genomes]
rs12350903	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12352398	1.00[ASN][1000 genomes]
rs12353048	1.00[ASN][1000 genomes]
rs1355172	0.87[EUR][1000 genomes]
rs1509311	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1553727	0.94[EUR][1000 genomes]
rs175762	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1848583	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs202321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2055773	0.87[EUR][1000 genomes]
rs2055774	0.87[EUR][1000 genomes]
rs2064030	1.00[ASN][1000 genomes]
rs2089618	0.90[EUR][1000 genomes]
rs2136354	0.90[EUR][1000 genomes]
rs2175083	0.87[EUR][1000 genomes]
rs2202865	1.00[ASN][1000 genomes]
rs2221706	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2382531	0.93[EUR][1000 genomes]
rs2382533	0.90[EUR][1000 genomes]
rs2382535	0.90[EUR][1000 genomes]
rs2382536	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2665515	1.00[ASN][1000 genomes]
rs2737840	1.00[ASN][1000 genomes]
rs276434	1.00[ASN][1000 genomes]
rs276437	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs276438	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs276439	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs276440	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs276442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs276445	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs276446	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs276450	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs276451	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2777951	1.00[ASN][1000 genomes]
rs2795125	1.00[ASN][1000 genomes]
rs2795128	1.00[ASN][1000 genomes]
rs2821525	1.00[ASN][1000 genomes]
rs2821529	1.00[ASN][1000 genomes]
rs2821542	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2821543	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2821544	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28449490	1.00[ASN][1000 genomes]
rs28497163	1.00[ASN][1000 genomes]
rs28796681	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28800775	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28805077	1.00[ASN][1000 genomes]
rs28808908	1.00[ASN][1000 genomes]
rs28844368	1.00[ASN][1000 genomes]
rs28882210	1.00[ASN][1000 genomes]
rs28893033	1.00[ASN][1000 genomes]
rs3119700	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3122701	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3122705	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3129711	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs365710	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs381205	1.00[ASN][1000 genomes]
rs392627	1.00[ASN][1000 genomes]
rs398117	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs399808	1.00[ASN][1000 genomes]
rs401393	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs413356	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs415157	1.00[ASN][1000 genomes]
rs418153	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4237140	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs424131	1.00[ASN][1000 genomes]
rs4445326	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4740623	0.90[EUR][1000 genomes]
rs4741532	0.93[EUR][1000 genomes]
rs4741533	0.93[EUR][1000 genomes]
rs4741536	0.84[EUR][1000 genomes]
rs4741537	0.84[EUR][1000 genomes]
rs592452	1.00[ASN][1000 genomes]
rs6474941	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6474943	0.83[AMR][1000 genomes]
rs6474947	0.93[EUR][1000 genomes]
rs6474949	0.87[EUR][1000 genomes]
rs6474956	0.85[EUR][1000 genomes]
rs6474957	0.90[EUR][1000 genomes]
rs6474973	0.81[EUR][1000 genomes]
rs7021840	1.00[ASN][1000 genomes]
rs7035422	0.97[EUR][1000 genomes]
rs7037893	0.88[EUR][1000 genomes]
rs7038210	0.83[EUR][1000 genomes]
rs7038920	0.90[EUR][1000 genomes]
rs7847148	0.97[EUR][1000 genomes]
rs7849159	0.87[EUR][1000 genomes]
rs7852936	1.00[ASN][1000 genomes]
rs7860339	1.00[ASN][1000 genomes]
rs7865193	0.84[EUR][1000 genomes]
rs7870315	0.94[EUR][1000 genomes]
rs796391	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs811282	1.00[ASN][1000 genomes]
rs926154	1.00[ASN][1000 genomes]
rs9298734	0.93[EUR][1000 genomes]
rs9406518	1.00[ASN][1000 genomes]
rs9919009	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892626	chr9:15389610-15694690	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv892629	chr9:15516375-15634326	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv3407839	chr9:15530438-15665653	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv892630	chr9:15554960-15694690	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv613652	chr9:15579744-15661859	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv613653	chr9:15590116-15668606	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv892631	chr9:15590116-15694690	Weak transcription ZNF genes & repeats Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv613654	chr9:15601971-15638364	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv613655	chr9:15602101-15670445	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv613656	chr9:15615321-15696501	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv466262	chr9:15615321-15727518	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv613657	chr9:15615321-15727518	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv969752	chr9:15615716-15639356	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15614200-15629800	Weak transcription	Fetal Lung	lung
2	chr9:15614400-15645000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr9:15618800-15629000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr9:15625000-15635400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr9:15627600-15628800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:15627800-15628400	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr9:15627800-15628600	Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr9:15628200-15628400	Flanking Active TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr9:15628200-15628400	ZNF genes & repeats	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links