Variant report

Variant	rs4006772
Chromosome Location	chr8:126263923-126263924
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:126263866..126265400-chr8:126266377..126268618,2	MCF-7	breast:
2	chr8:126252965..126254791-chr8:126262901..126264885,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10110845	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10283134	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs10956233	0.89[CHB][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11994861	0.93[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv949614	chr8:126063646-126376699	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126233800-126264800	Weak transcription	Left Ventricle	heart
2	chr8:126239600-126274000	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr8:126240400-126267000	Weak transcription	Primary T cells from cord blood	blood
4	chr8:126243200-126267000	Weak transcription	Brain Angular Gyrus	brain
5	chr8:126245600-126269600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:126247200-126265200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr8:126250200-126265000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:126251400-126272000	Weak transcription	Fetal Intestine Small	intestine
9	chr8:126251600-126265000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr8:126251600-126265200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr8:126254000-126270400	Weak transcription	Hela-S3	cervix
12	chr8:126255200-126268600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr8:126255200-126271600	Weak transcription	Right Atrium	heart
14	chr8:126255400-126287800	Weak transcription	Primary B cells from cord blood	blood
15	chr8:126256200-126271600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr8:126256400-126271800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr8:126256600-126268800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr8:126257400-126273600	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr8:126260600-126264000	Weak transcription	GM12878-XiMat	blood
20	chr8:126260600-126269400	Weak transcription	Fetal Lung	lung
21	chr8:126261400-126286000	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr8:126261600-126272600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr8:126262000-126264200	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr8:126262000-126265000	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr8:126262000-126265000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr8:126262200-126264400	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr8:126262200-126268800	Weak transcription	Pancreas	Pancrea
28	chr8:126262200-126288200	Weak transcription	Ovary	ovary
29	chr8:126262600-126265200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr8:126263400-126264000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr8:126263400-126279000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr8:126263600-126267400	Weak transcription	Primary B cells from peripheral blood	blood

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