Variant report

Variant	rs4011894
Chromosome Location	chr1:220787302-220787303
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1073460	1.00[CEU][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10746403	0.83[CEU][hapmap]
rs10779408	0.82[EUR][1000 genomes]
rs10779409	0.83[EUR][1000 genomes]
rs10779414	0.84[CEU][hapmap]
rs12048541	0.88[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs12408540	0.84[CEU][hapmap]
rs12758833	0.83[EUR][1000 genomes]
rs17007885	0.88[CEU][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs1933002	1.00[CEU][hapmap];0.90[JPT][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1933008	0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs2244448	0.84[CEU][hapmap]
rs2253641	1.00[CEU][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2378401	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2378402	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2589578	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2589586	0.84[CEU][hapmap]
rs2589588	1.00[CEU][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2589589	0.84[CEU][hapmap]
rs2786601	1.00[CEU][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2786604	1.00[CEU][hapmap];0.91[JPT][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2786606	0.84[CEU][hapmap]
rs2786607	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2786609	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2786610	0.84[CEU][hapmap]
rs2786613	1.00[CEU][hapmap];0.91[JPT][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2786617	0.84[CEU][hapmap]
rs2786619	1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2889928	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2993209	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2994527	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35553664	0.83[EUR][1000 genomes]
rs3737296	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3753873	0.81[CEU][hapmap]
rs4846657	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6541155	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs6677302	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6699189	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6699196	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7514431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9431262	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220749800-220799000	Weak transcription	Aorta	Aorta
2	chr1:220751800-220799000	Weak transcription	Fetal Stomach	stomach
3	chr1:220752600-220808600	Weak transcription	Left Ventricle	heart
4	chr1:220756000-220790800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr1:220761200-220799200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr1:220764200-220790200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:220767400-220798600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:220767600-220799000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr1:220767800-220826400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr1:220768000-220790800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr1:220768000-220804600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr1:220768000-220813800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr1:220768200-220791600	Weak transcription	Brain Germinal Matrix	brain
14	chr1:220768400-220799000	Weak transcription	Adipose Nuclei	Adipose
15	chr1:220774000-220796000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr1:220775400-220788400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr1:220776000-220798800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr1:220776400-220789800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr1:220776400-220790400	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr1:220777200-220793200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr1:220778000-220793600	Weak transcription	Colon Smooth Muscle	Colon
22	chr1:220778800-220791000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr1:220778800-220837200	Weak transcription	NHEK	skin
24	chr1:220781000-220791600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr1:220782800-220825800	Weak transcription	Fetal Brain Male	brain
26	chr1:220783200-220788800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr1:220783200-220815000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr1:220783400-220791800	Weak transcription	Stomach Smooth Muscle	stomach
29	chr1:220784200-220836600	Weak transcription	Fetal Lung	lung
30	chr1:220784600-220787800	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr1:220784800-220799200	Weak transcription	Fetal Muscle Leg	muscle
32	chr1:220784800-220815000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr1:220785000-220789600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr1:220785000-220791800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr1:220785000-220799200	Weak transcription	Fetal Brain Female	brain
36	chr1:220785000-220815400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr1:220785800-220808600	Weak transcription	Brain Anterior Caudate	brain
38	chr1:220786800-220799800	Weak transcription	Fetal Heart	heart

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