Variant report

Variant	rs4017455
Chromosome Location	chr1:160883174-160883175
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs34295669	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3953094	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3953095	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4017453	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4129196	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	esv3430322	chr1:160851829-160920480	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv947200	chr1:160870136-160905390	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4017455	RP11-312J18.6	cis	Thyroid	GTEx

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160880000-160884400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:160880600-160884000	Enhancers	Fetal Intestine Small	intestine
3	chr1:160882000-160883200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr1:160882000-160883400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr1:160882000-160883800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr1:160882400-160883600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:160882400-160883800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr1:160882600-160883800	Weak transcription	Fetal Intestine Large	intestine
9	chr1:160882800-160883200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:160882800-160883800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr1:160882800-160884800	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr1:160883000-160883200	Enhancers	HUES64 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links