Variant report
| Variant | rs4018045 |
|---|---|
| Chromosome Location | chr5:98020474-98020475 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10038064 | 0.83[ASN][1000 genomes] |
| rs10038307 | 0.85[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10039819 | 0.87[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10043199 | 0.83[ASN][1000 genomes] |
| rs10045612 | 0.83[ASN][1000 genomes] |
| rs10059259 | 0.87[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10065249 | 0.87[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10068399 | 0.82[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10479181 | 0.87[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10479183 | 0.82[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10515282 | 1.00[ASN][1000 genomes] |
| rs11949924 | 0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11950934 | 0.83[ASN][1000 genomes] |
| rs13361670 | 0.83[ASN][1000 genomes] |
| rs1421633 | 0.83[ASN][1000 genomes] |
| rs1421634 | 0.83[ASN][1000 genomes] |
| rs17166201 | 0.83[ASN][1000 genomes] |
| rs17661925 | 0.87[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2112145 | 0.83[ASN][1000 genomes] |
| rs3907829 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs57871526 | 0.82[ASN][1000 genomes] |
| rs59126397 | 0.83[ASN][1000 genomes] |
| rs6883625 | 0.83[ASN][1000 genomes] |
| rs73149511 | 0.85[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7444475 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7728547 | 0.87[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs7729850 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1016611 | chr5:97873846-98035559 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv537816 | chr5:97873846-98035559 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv1029509 | chr5:97888644-98040172 | ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv882413 | chr5:97918829-98022320 | Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:98016200-98026000 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
