Variant report

Variant	rs401863
Chromosome Location	chr6:100961759-100961760
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:100950945..100952516-chr6:100960244..100962727,2	K562	blood:
2	chr6:100954917..100956828-chr6:100959849..100962215,2	K562	blood:
3	chr6:100960099..100962319-chr6:100964454..100967453,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs239191	1.00[AMR][1000 genomes]
rs239202	1.00[AMR][1000 genomes]
rs239240	1.00[AMR][1000 genomes]
rs240778	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6570929	1.00[AMR][1000 genomes]
rs6915494	1.00[AMR][1000 genomes]
rs6938518	1.00[AMR][1000 genomes]
rs7761055	1.00[AMR][1000 genomes]
rs885297	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1028122	chr6:100774245-100964347	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1023710	chr6:100810738-101001115	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv538388	chr6:100810738-101001115	Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv886444	chr6:100961198-101084946	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100949800-100966400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:100951600-100969800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:100952600-100967600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:100952800-100997400	Weak transcription	A549	lung
5	chr6:100953000-100968400	Weak transcription	Fetal Kidney	kidney
6	chr6:100953200-100966200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:100953400-100966600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr6:100953400-100967400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr6:100954200-100966200	Strong transcription	Dnd41	blood
10	chr6:100954600-100986200	Weak transcription	Spleen	Spleen
11	chr6:100954800-100966200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:100955000-100962800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:100955200-100962200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:100955200-100972800	Weak transcription	Right Ventricle	heart
15	chr6:100955400-100965800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:100955600-100962200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:100955600-100964200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:100955600-100965600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:100955600-100966000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr6:100955800-100962200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr6:100955800-100964800	Weak transcription	Psoas Muscle	Psoas
22	chr6:100955800-100965600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr6:100955800-100965600	Weak transcription	Brain Angular Gyrus	brain
24	chr6:100955800-100966400	Weak transcription	Colonic Mucosa	Colon
25	chr6:100955800-100966800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:100955800-100991200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr6:100956400-100965400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:100956800-100965400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr6:100956800-100966200	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr6:100957200-100961800	Weak transcription	Hela-S3	cervix
31	chr6:100957400-100963400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr6:100957400-100992400	Weak transcription	Small Intestine	intestine
33	chr6:100957800-100964800	Weak transcription	Rectal Smooth Muscle	rectum
34	chr6:100958000-100964800	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr6:100958200-100976600	Weak transcription	NHDF-Ad	bronchial
36	chr6:100958600-100974000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr6:100958800-100964400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr6:100959800-100964800	Weak transcription	Fetal Intestine Small	intestine
39	chr6:100959800-100966800	Weak transcription	Fetal Stomach	stomach
40	chr6:100960200-100966200	Weak transcription	Brain Hippocampus Middle	brain
41	chr6:100960200-100978000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr6:100960600-100963000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr6:100960600-100963200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr6:100960600-100963400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr6:100960600-100963400	Weak transcription	Adipose Nuclei	Adipose
46	chr6:100960600-100963600	Weak transcription	Pancreas	Pancrea
47	chr6:100960600-100964800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr6:100960600-100967400	Weak transcription	Fetal Thymus	thymus
49	chr6:100960600-100973800	Weak transcription	HUVEC	blood vessel
50	chr6:100960600-100990200	Weak transcription	Brain Substantia Nigra	brain

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