Variant report

Variant	rs402294
Chromosome Location	chr7:101723260-101723261
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101722804..101725007-chr7:101742245..101744915,2	K562	blood:
2	chr7:101711827..101713959-chr7:101721934..101723640,2	MCF-7	breast:
3	chr7:101715723..101719126-chr7:101720326..101723914,4	K562	blood:
4	chr7:101717039..101718587-chr7:101722028..101724096,2	K562	blood:
5	chr7:101706528..101709517-chr7:101721356..101724154,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10268506	1.00[CHB][hapmap]
rs365397	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs366345	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs367773	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs370760	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs372321	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs372711	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs372989	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs375417	0.87[CEU][hapmap]
rs376183	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs377587	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs377612	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs379347	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs380934	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs381145	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs384436	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs393074	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs403883	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs404523	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs405073	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs405141	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs406012	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs409420	0.96[EUR][1000 genomes]
rs411844	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs412332	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs412524	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs413348	1.00[ASN][1000 genomes]
rs420709	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs421154	1.00[ASN][1000 genomes]
rs421430	0.93[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs425577	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4294126	0.93[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs430154	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs431821	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs432002	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs432600	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs438908	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs441160	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs443159	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs443293	0.93[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4729771	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73185898	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101707200-101738000	Weak transcription	Colon Smooth Muscle	Colon
2	chr7:101708200-101765000	Weak transcription	Small Intestine	intestine
3	chr7:101708400-101726000	Weak transcription	NHEK	skin
4	chr7:101715200-101725800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr7:101715200-101728600	Weak transcription	Colonic Mucosa	Colon
6	chr7:101715200-101749800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr7:101715400-101724000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr7:101715400-101749600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr7:101715600-101724200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:101715600-101725000	Weak transcription	Ovary	ovary
11	chr7:101715600-101725200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr7:101715600-101725200	Weak transcription	HSMM	muscle
13	chr7:101715600-101725800	Weak transcription	Adipose Nuclei	Adipose
14	chr7:101715600-101726400	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr7:101715600-101728600	Weak transcription	Primary B cells from peripheral blood	blood
16	chr7:101715600-101745200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr7:101715600-101745200	Weak transcription	HSMMtube	muscle
18	chr7:101715800-101724000	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr7:101715800-101726000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr7:101715800-101732600	Weak transcription	Fetal Kidney	kidney
21	chr7:101715800-101732800	Weak transcription	Aorta	Aorta
22	chr7:101715800-101741000	Weak transcription	Gastric	stomach
23	chr7:101715800-101741200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr7:101716000-101725200	Weak transcription	NHLF	lung
25	chr7:101716000-101736600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr7:101716000-101743000	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr7:101716000-101746600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr7:101716400-101724200	Weak transcription	Osteobl	bone
29	chr7:101716400-101758600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr7:101717600-101723800	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr7:101717800-101741200	Weak transcription	Pancreas	Pancrea
32	chr7:101718000-101724200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr7:101718000-101732800	Weak transcription	Esophagus	oesophagus
34	chr7:101718600-101725000	Weak transcription	Lung	lung
35	chr7:101718600-101736600	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr7:101718800-101724200	Weak transcription	Primary B cells from cord blood	blood
37	chr7:101719000-101724200	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr7:101719200-101724200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr7:101719200-101726000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr7:101719800-101723400	Weak transcription	Fetal Thymus	thymus
41	chr7:101720000-101723400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr7:101720200-101725000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr7:101720600-101725200	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr7:101720800-101725000	Weak transcription	GM12878-XiMat	blood
45	chr7:101720800-101732600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr7:101721000-101724200	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr7:101721200-101726600	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr7:101721800-101723400	Enhancers	A549	lung
49	chr7:101721800-101724400	Enhancers	Fetal Heart	heart
50	chr7:101722000-101724400	Enhancers	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links