Variant report

Variant	rs4034230
Chromosome Location	chr7:90706335-90706336
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:89975562-89981754..7:90704597-90714711	H1-hESC	embryonic stem cell:	embryo
2	7:90337078-90341001..7:90704597-90714711	GM12878	blood:
3	7:90224881-90229046..7:90704597-90714711	GM12878	blood:
4	7:90022908-90033390..7:90704597-90714711	GM12878	blood:
5	7:90185489-90196553..7:90704597-90714711	H1-hESC	embryonic stem cell:	embryo
6	7:89928454-89933690..7:90704597-90714711	H1-hESC	embryonic stem cell:	embryo
7	7:90090267-90099529..7:90704597-90714711	GM12878	blood:

Variant related genes	Relation type
ENSG00000273299	Chromatin interaction
ENSG00000058091	Chromatin interaction
ENSG00000223969	Chromatin interaction
ENSG00000105792	Chromatin interaction
ENSG00000105793	Chromatin interaction
ENSG00000251154	Chromatin interaction
ENSG00000157224	Chromatin interaction

Extended variants
information (count: 152 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:151)

rs_ID	r²[population]
rs10091155	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10100690	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10103516	0.84[AMR][1000 genomes]
rs10464819	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10464848	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10464849	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10955511	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10955513	0.86[EUR][1000 genomes]
rs10955514	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11995419	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12546169	0.81[EUR][1000 genomes]
rs12546985	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12674513	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12674533	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12679958	0.86[EUR][1000 genomes]
rs12680451	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12682610	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13251321	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13251597	0.86[EUR][1000 genomes]
rs13257672	0.92[AMR][1000 genomes]
rs1380096	0.88[EUR][1000 genomes]
rs1380097	0.87[EUR][1000 genomes]
rs1380098	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1380099	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1458915	0.88[EUR][1000 genomes]
rs1458916	0.88[EUR][1000 genomes]
rs1458917	0.88[EUR][1000 genomes]
rs1458921	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1458922	0.88[EUR][1000 genomes]
rs1458924	0.89[EUR][1000 genomes]
rs1458926	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1458927	0.86[EUR][1000 genomes]
rs1548082	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1548083	0.89[EUR][1000 genomes]
rs1585295	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1585296	0.88[EUR][1000 genomes]
rs1585297	0.88[EUR][1000 genomes]
rs1947630	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1947631	0.89[EUR][1000 genomes]
rs2007179	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2054255	0.88[EUR][1000 genomes]
rs2067780	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2085628	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2085629	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2125512	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2168965	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2199122	0.88[EUR][1000 genomes]
rs28407429	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2882176	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28870477	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2926191	0.88[EUR][1000 genomes]
rs2926192	0.88[EUR][1000 genomes]
rs2926198	0.88[EUR][1000 genomes]
rs2926199	0.88[EUR][1000 genomes]
rs2926202	0.88[EUR][1000 genomes]
rs2926203	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2926204	0.88[EUR][1000 genomes]
rs2926213	0.80[EUR][1000 genomes]
rs2926216	0.89[EUR][1000 genomes]
rs2926217	0.80[EUR][1000 genomes]
rs2926220	0.89[EUR][1000 genomes]
rs2926222	0.88[EUR][1000 genomes]
rs2926223	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2926245	0.88[EUR][1000 genomes]
rs2926246	0.85[EUR][1000 genomes]
rs2926247	0.88[EUR][1000 genomes]
rs2926249	0.82[EUR][1000 genomes]
rs2926250	0.80[EUR][1000 genomes]
rs2926251	0.82[EUR][1000 genomes]
rs2926254	0.88[EUR][1000 genomes]
rs2926255	0.87[EUR][1000 genomes]
rs2926256	0.87[EUR][1000 genomes]
rs2926257	0.88[EUR][1000 genomes]
rs2926258	0.88[EUR][1000 genomes]
rs2926260	0.83[EUR][1000 genomes]
rs2926261	0.88[EUR][1000 genomes]
rs2926264	0.88[EUR][1000 genomes]
rs2926268	0.88[EUR][1000 genomes]
rs2926270	0.88[EUR][1000 genomes]
rs2926271	0.88[EUR][1000 genomes]
rs2926273	0.88[EUR][1000 genomes]
rs2926275	0.88[EUR][1000 genomes]
rs2926276	0.87[EUR][1000 genomes]
rs2926283	0.88[EUR][1000 genomes]
rs2980565	0.88[EUR][1000 genomes]
rs2980587	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2980588	0.89[EUR][1000 genomes]
rs2980590	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2980592	0.89[EUR][1000 genomes]
rs2980595	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2980596	0.80[EUR][1000 genomes]
rs2980598	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2980599	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2980601	0.89[EUR][1000 genomes]
rs2980603	0.88[EUR][1000 genomes]
rs2980604	0.88[EUR][1000 genomes]
rs2980605	0.88[EUR][1000 genomes]
rs2980608	0.88[EUR][1000 genomes]
rs2980609	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2980610	0.85[EUR][1000 genomes]
rs2980612	0.88[EUR][1000 genomes]
rs2980613	0.88[EUR][1000 genomes]
rs2980615	0.88[EUR][1000 genomes]
rs2980616	0.88[EUR][1000 genomes]
rs2980617	0.88[EUR][1000 genomes]
rs2980618	0.88[EUR][1000 genomes]
rs2980622	0.88[EUR][1000 genomes]
rs2980624	0.87[EUR][1000 genomes]
rs2980629	0.88[EUR][1000 genomes]
rs2980631	0.88[EUR][1000 genomes]
rs2980633	0.88[EUR][1000 genomes]
rs2980634	0.82[EUR][1000 genomes]
rs2980635	0.80[EUR][1000 genomes]
rs2980638	0.82[EUR][1000 genomes]
rs34049275	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35850605	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3890699	0.86[EUR][1000 genomes]
rs4130640	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4236803	0.86[EUR][1000 genomes]
rs4236804	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4257986	0.86[EUR][1000 genomes]
rs4265160	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4273834	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4288351	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4291240	0.86[EUR][1000 genomes]
rs4311632	0.86[EUR][1000 genomes]
rs4332104	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4339614	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4389900	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4454252	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4570131	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4604407	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4734203	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4734204	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4734205	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4734210	0.88[EUR][1000 genomes]
rs4735114	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4735116	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4735118	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4735121	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4735122	0.80[EUR][1000 genomes]
rs55765942	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62511091	0.86[EUR][1000 genomes]
rs6469245	0.86[EUR][1000 genomes]
rs6988041	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6998731	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6998883	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7008174	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7817746	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7817909	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs922044	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532172	chr7:89950062-90792406	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:90665800-90717400	Weak transcription	Lung	lung
2	chr7:90671200-90712800	Weak transcription	Fetal Muscle Leg	muscle
3	chr7:90671200-90741800	Weak transcription	Liver	Liver
4	chr7:90673000-90711600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr7:90675000-90713000	Weak transcription	Aorta	Aorta
6	chr7:90680600-90711400	Weak transcription	GM12878-XiMat	blood
7	chr7:90682800-90712600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr7:90685600-90713600	Weak transcription	Primary B cells from cord blood	blood
9	chr7:90694200-90711600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:90694600-90709400	Weak transcription	NHLF	lung
11	chr7:90694800-90708200	Weak transcription	Osteobl	bone
12	chr7:90694800-90708400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr7:90694800-90708400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr7:90696200-90707600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:90696400-90710400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr7:90697000-90713600	Weak transcription	Fetal Stomach	stomach
17	chr7:90698800-90722400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr7:90701000-90719000	Weak transcription	Fetal Intestine Small	intestine
19	chr7:90701200-90725600	Weak transcription	Pancreas	Pancrea
20	chr7:90701400-90708400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr7:90701400-90726000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr7:90702000-90707600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr7:90702000-90708400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr7:90702000-90719000	Weak transcription	Fetal Muscle Trunk	muscle
25	chr7:90702200-90711400	Weak transcription	Primary B cells from peripheral blood	blood
26	chr7:90702200-90734400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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