Variant report
Variant | rs406001 |
---|---|
Chromosome Location | chr7:52006415-52006416 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs364752 | 1.00[EUR][1000 genomes] |
rs392252 | 1.00[EUR][1000 genomes] |
rs400204 | 0.83[EUR][1000 genomes] |
rs410473 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs424283 | 0.83[EUR][1000 genomes] |
rs426522 | 0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs428360 | 0.87[AMR][1000 genomes] |
rs454526 | 1.00[EUR][1000 genomes] |
rs616199 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs664926 | 0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv3487105 | chr7:51737945-52166865 | Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
2 | esv3487106 | chr7:51737945-52166865 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
3 | nsv1021159 | chr7:51991383-52596649 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
Disease | PMID | Source |
---|---|---|
Post-traumatic stress disorder (asjusted for relatedness) | 23726511 | GWAS catalog |